Analysis of interatomic Contacts of Structural Units in PDB entry:
2GL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GL5 entry

There are 2 chains in PDB entry 2GL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 400
B
 SER 0LYS 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2GL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
17 21Right-handed 310
Helix 3
3
A
49 61Right-handed alpha
Helix 4
4
A
62 64Right-handed 310
Helix 5
5
A
71 82Right-handed alpha
Helix 6
6
A
84 88Right-handed 310
Helix 7
7
A
90 113Right-handed alpha
Helix 8
8
A
115 120Right-handed alpha
Helix 9
9
A
135 138Right-handed 310
Helix 10
10
A
148 162Right-handed alpha
Helix 11
11
A
187 192Right-handed 310
Helix 12
12
A
195 214Right-handed alpha
Helix 13
13
A
228 240Right-handed alpha
Helix 14
14
A
255 266Right-handed alpha
Helix 15
15
A
279 288Right-handed alpha
Helix 16
16
A
302 316Right-handed alpha
Helix 17
17
A
328 342Right-handed alpha
Helix 18
18
A
356 361Right-handed alpha
Helix 19
19
A
387 392Right-handed alpha
Helix 20
20
B
12 16Right-handed 310
Helix 21
21
B
17 21Right-handed 310
Helix 22
22
B
49 61Right-handed alpha
Helix 23
23
B
62 64Right-handed 310
Helix 24
24
B
71 82Right-handed alpha
Helix 25
25
B
84 88Right-handed 310
Helix 26
26
B
90 113Right-handed alpha
Helix 27
27
B
115 120Right-handed alpha
Helix 28
28
B
135 138Right-handed 310
Helix 29
29
B
148 162Right-handed alpha
Helix 30
30
B
187 192Right-handed 310
Helix 31
31
B
195 214Right-handed alpha
Helix 32
32
B
228 240Right-handed alpha
Helix 33
33
B
241 243Right-handed 310
Helix 34
34
B
255 265Right-handed alpha
Helix 35
35
B
277 288Right-handed alpha
Helix 36
36
B
302 316Right-handed alpha
Helix 37
37
B
328 342Right-handed alpha
Helix 38
38
B
356 361Right-handed alpha
Helix 39
39
B
387 392Right-handed alpha
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There are 6 sheets in PDB entry 2GL5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
395 399anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
293 294parallel
Strand 3
A
270 272parallel
Strand 4
A
244 248parallel
Strand 5
A
218 222parallel
Strand 6
A
166 169parallel
Strand 7
A
128 133parallel
Strand 8
A
348 351parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
293 294parallel
Strand 3
A
270 272parallel
Strand 4
A
244 248parallel
Strand 5
A
218 222parallel
Strand 6
A
166 169parallel
Strand 7
A
128 133parallel
Strand 8
A
373 374anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
26 32anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
395 399anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
293 294parallel
Strand 3
B
270 272parallel
Strand 4
B
246 248parallel
Strand 5
B
218 222parallel
Strand 6
B
166 169parallel
Strand 7
B
128 133parallel
Strand 8
B
348 351parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
293 294parallel
Strand 3
B
270 272parallel
Strand 4
B
246 248parallel
Strand 5
B
218 222parallel
Strand 6
B
166 169parallel
Strand 7
B
128 133parallel
Strand 8
B
373 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il