Analysis of interatomic Contacts of Structural Units in PDB entry:
2GLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GLX entry

There are 6 chains in PDB entry 2GLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	LEU 333
B	ASN 2	LEU 333
C	ASN 2	LEU 333
D	ASN 2	LEU 333
E	ASN 2	LEU 333
F	ASN 2	LEU 333

There are 91 helices in PDB entry 2GLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	16	Right-handed alpha
Helix 2	2	A	16	24	Right-handed alpha
Helix 3	3	A	35	46	Right-handed alpha
Helix 4	4	A	54	60	Right-handed alpha
Helix 5	5	A	72	74	Right-handed 310
Helix 6	6	A	75	86	Right-handed alpha
Helix 7	7	A	99	114	Right-handed alpha
Helix 8	8	A	122	125	Right-handed 310
Helix 9	9	A	126	138	Right-handed alpha
Helix 10	10	A	156	160	Right-handed 310
Helix 11	11	A	161	165	Right-handed 310
Helix 12	12	A	172	177	Right-handed alpha
Helix 13	13	A	177	190	Right-handed alpha
Helix 14	14	A	281	295	Right-handed alpha
Helix 15	15	A	303	324	Right-handed alpha
Helix 16	16	B	10	16	Right-handed alpha
Helix 17	17	B	16	24	Right-handed alpha
Helix 18	18	B	35	46	Right-handed alpha
Helix 19	19	B	54	60	Right-handed alpha
Helix 20	20	B	72	74	Right-handed 310
Helix 21	21	B	75	86	Right-handed alpha
Helix 22	22	B	99	114	Right-handed alpha
Helix 23	23	B	122	125	Right-handed 310
Helix 24	24	B	126	138	Right-handed alpha
Helix 25	25	B	156	160	Right-handed 310
Helix 26	26	B	161	165	Right-handed 310
Helix 27	27	B	166	170	Right-handed 310
Helix 28	28	B	172	177	Right-handed alpha
Helix 29	29	B	177	190	Right-handed alpha
Helix 30	30	B	281	295	Right-handed alpha
Helix 31	31	B	303	324	Right-handed alpha
Helix 32	32	C	10	16	Right-handed alpha
Helix 33	33	C	16	24	Right-handed alpha
Helix 34	34	C	35	47	Right-handed alpha
Helix 35	35	C	54	61	Right-handed alpha
Helix 36	36	C	72	74	Right-handed 310
Helix 37	37	C	75	86	Right-handed alpha
Helix 38	38	C	99	114	Right-handed alpha
Helix 39	39	C	122	125	Right-handed 310
Helix 40	40	C	126	138	Right-handed alpha
Helix 41	41	C	156	160	Right-handed 310
Helix 42	42	C	161	165	Right-handed 310
Helix 43	43	C	166	170	Right-handed 310
Helix 44	44	C	172	177	Right-handed alpha
Helix 45	45	C	177	190	Right-handed alpha
Helix 46	46	C	281	295	Right-handed alpha
Helix 47	47	C	303	324	Right-handed alpha
Helix 48	48	D	10	16	Right-handed alpha
Helix 49	49	D	16	23	Right-handed alpha
Helix 50	50	D	35	46	Right-handed alpha
Helix 51	51	D	54	60	Right-handed alpha
Helix 52	52	D	72	74	Right-handed 310
Helix 53	53	D	75	86	Right-handed alpha
Helix 54	54	D	99	113	Right-handed alpha
Helix 55	55	D	122	125	Right-handed 310
Helix 56	56	D	126	138	Right-handed alpha
Helix 57	57	D	156	160	Right-handed 310
Helix 58	58	D	161	165	Right-handed 310
Helix 59	59	D	166	170	Right-handed 310
Helix 60	60	D	172	177	Right-handed alpha
Helix 61	61	D	177	189	Right-handed alpha
Helix 62	62	D	281	296	Right-handed alpha
Helix 63	63	D	303	324	Right-handed alpha
Helix 64	64	E	10	16	Right-handed alpha
Helix 65	65	E	16	24	Right-handed alpha
Helix 66	66	E	35	46	Right-handed alpha
Helix 67	67	E	54	60	Right-handed alpha
Helix 68	68	E	75	86	Right-handed alpha
Helix 69	69	E	99	113	Right-handed alpha
Helix 70	70	E	122	125	Right-handed 310
Helix 71	71	E	126	138	Right-handed alpha
Helix 72	72	E	156	160	Right-handed 310
Helix 73	73	E	161	165	Right-handed 310
Helix 74	74	E	166	170	Right-handed 310
Helix 75	75	E	172	190	Right-handed alpha
Helix 76	76	E	281	295	Right-handed alpha
Helix 77	77	E	303	324	Right-handed alpha
Helix 78	78	F	10	16	Right-handed alpha
Helix 79	79	F	16	23	Right-handed alpha
Helix 80	80	F	35	46	Right-handed alpha
Helix 81	81	F	54	60	Right-handed alpha
Helix 82	82	F	72	74	Right-handed 310
Helix 83	83	F	75	86	Right-handed alpha
Helix 84	84	F	99	114	Right-handed alpha
Helix 85	85	F	122	125	Right-handed 310
Helix 86	86	F	126	138	Right-handed alpha
Helix 87	87	F	156	160	Right-handed 310
Helix 88	88	F	161	165	Right-handed 310
Helix 89	89	F	172	189	Right-handed alpha
Helix 90	90	F	281	295	Right-handed alpha
Helix 91	91	F	303	324	Right-handed alpha

There are 12 sheets in PDB entry 2GLX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	3	7	parallel
Strand 3	A	66	69	parallel
Strand 4	A	89	92	parallel
Strand 5	A	117	119	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	249	253	anti-parallel
Strand 4	A	240	245	anti-parallel
Strand 5	A	144	152	anti-parallel
Strand 6	A	225	231	parallel
Strand 7	A	213	220	anti-parallel
Strand 8	A	193	201	anti-parallel
Strand 9	A	327	328	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	27	32	parallel
Strand 3	B	3	7	parallel
Strand 4	B	66	69	parallel
Strand 5	B	89	92	parallel
Strand 6	B	117	119	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	263	268	anti-parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	240	245	anti-parallel
Strand 5	B	144	152	anti-parallel
Strand 6	B	225	231	parallel
Strand 7	B	213	220	anti-parallel
Strand 8	B	193	201	anti-parallel
Strand 9	B	327	328	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	27	32	parallel
Strand 3	C	3	7	parallel
Strand 4	C	66	69	parallel
Strand 5	C	89	92	parallel
Strand 6	C	117	119	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	263	268	anti-parallel
Strand 3	C	248	253	anti-parallel
Strand 4	C	240	245	anti-parallel
Strand 5	C	144	152	anti-parallel
Strand 6	C	225	231	parallel
Strand 7	C	213	220	anti-parallel
Strand 8	C	193	201	anti-parallel
Strand 9	C	327	328	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	32	first strand
Strand 2	D	3	7	parallel
Strand 3	D	66	69	parallel
Strand 4	D	89	92	parallel
Strand 5	D	117	119	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	263	267	anti-parallel
Strand 3	D	249	253	anti-parallel
Strand 4	D	240	245	anti-parallel
Strand 5	D	144	152	anti-parallel
Strand 6	D	225	231	parallel
Strand 7	D	213	220	anti-parallel
Strand 8	D	193	201	anti-parallel
Strand 9	D	327	328	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	27	32	parallel
Strand 3	E	3	7	parallel
Strand 4	E	66	69	parallel
Strand 5	E	89	92	parallel
Strand 6	E	117	119	parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	275	first strand
Strand 2	E	263	268	anti-parallel
Strand 3	E	248	253	anti-parallel
Strand 4	E	240	245	anti-parallel
Strand 5	E	144	152	anti-parallel
Strand 6	E	225	231	parallel
Strand 7	E	213	220	anti-parallel
Strand 8	E	193	201	anti-parallel
Strand 9	E	327	328	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	32	first strand
Strand 2	F	3	7	parallel
Strand 3	F	66	69	parallel
Strand 4	F	89	92	parallel
Strand 5	F	117	119	parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	274	first strand
Strand 2	F	263	267	anti-parallel
Strand 3	F	249	253	anti-parallel
Strand 4	F	240	245	anti-parallel
Strand 5	F	144	152	anti-parallel
Strand 6	F	225	231	parallel
Strand 7	F	213	220	anti-parallel
Strand 8	F	193	201	anti-parallel
Strand 9	F	327	328	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GLX