Analysis of interatomic Contacts of Structural Units in PDB entry:
2GM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GM1 entry

There are 4 chains in PDB entry 2GM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17GLN 367
B
 LYS 17LYS 362
D
 GLY 16GLN 367
E
 LYS 17GLN 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2GM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed alpha
Helix 2
2
A
77 95Right-handed alpha
Helix 3
3
A
110 116Right-handed alpha
Helix 4
4
A
134 151Right-handed alpha
Helix 5
5
A
206 215Right-handed alpha
Helix 6
6
A
217 228Right-handed alpha
Helix 7
7
A
230 235Right-handed alpha
Helix 8
8
A
268 272Right-handed 310
Helix 9
9
A
289 304Right-handed alpha
Helix 10
10
A
314 320Right-handed alpha
Helix 11
11
A
321 324Right-handed 310
Helix 12
12
A
339 341Right-handed 310
Helix 13
13
A
342 357Right-handed alpha
Helix 14
14
B
29 35Right-handed alpha
Helix 15
15
B
77 95Right-handed alpha
Helix 16
16
B
110 116Right-handed alpha
Helix 17
17
B
134 151Right-handed alpha
Helix 18
18
B
206 228Right-handed alpha
Helix 19
19
B
230 235Right-handed alpha
Helix 20
20
B
268 272Right-handed 310
Helix 21
21
B
289 304Right-handed alpha
Helix 22
22
B
314 320Right-handed alpha
Helix 23
23
B
321 324Right-handed 310
Helix 24
24
B
339 341Right-handed 310
Helix 25
25
B
342 357Right-handed alpha
Helix 26
26
D
29 35Right-handed alpha
Helix 27
27
D
77 95Right-handed alpha
Helix 28
28
D
110 116Right-handed alpha
Helix 29
29
D
134 151Right-handed alpha
Helix 30
30
D
206 228Right-handed alpha
Helix 31
31
D
230 235Right-handed alpha
Helix 32
32
D
268 272Right-handed 310
Helix 33
33
D
289 304Right-handed alpha
Helix 34
34
D
310 313Right-handed 310
Helix 35
35
D
314 320Right-handed alpha
Helix 36
36
D
321 324Right-handed 310
Helix 37
37
D
339 341Right-handed 310
Helix 38
38
D
342 357Right-handed alpha
Helix 39
39
E
29 35Right-handed alpha
Helix 40
40
E
77 95Right-handed alpha
Helix 41
41
E
110 116Right-handed alpha
Helix 42
42
E
126 130Right-handed 310
Helix 43
43
E
134 151Right-handed alpha
Helix 44
44
E
206 228Right-handed alpha
Helix 45
45
E
230 235Right-handed alpha
Helix 46
46
E
268 272Right-handed 310
Helix 47
47
E
289 304Right-handed alpha
Helix 48
48
E
310 313Right-handed 310
Helix 49
49
E
314 320Right-handed alpha
Helix 50
50
E
321 324Right-handed 310
Helix 51
51
E
339 341Right-handed 310
Helix 52
52
E
342 357Right-handed alpha
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There are 15 sheets in PDB entry 2GM1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
329 336parallel
Strand 4
A
98 105parallel
Strand 5
A
258 265parallel
Strand 6
A
236 245anti-parallel
Strand 7
A
154 164anti-parallel
Strand 8
A
167 170anti-parallel
Strand 9
A
181 182anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
20 25parallel
Strand 3
A
329 336parallel
Strand 4
A
98 105parallel
Strand 5
A
258 265parallel
Strand 6
A
236 245anti-parallel
Strand 7
A
154 164anti-parallel
Strand 8
A
202 204anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
63 67anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
194 195anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
20 25parallel
Strand 3
B
331 336parallel
Strand 4
B
98 105parallel
Strand 5
B
258 265parallel
Strand 6
B
236 245anti-parallel
Strand 7
B
154 164anti-parallel
Strand 8
B
167 170anti-parallel
Strand 9
B
181 182anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
20 25parallel
Strand 3
B
331 336parallel
Strand 4
B
98 105parallel
Strand 5
B
258 265parallel
Strand 6
B
236 245anti-parallel
Strand 7
B
154 164anti-parallel
Strand 8
B
202 204anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
63 67anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
194 195anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 72first strand
Strand 2
D
20 25parallel
Strand 3
D
331 336parallel
Strand 4
D
98 105parallel
Strand 5
D
258 265parallel
Strand 6
D
236 245anti-parallel
Strand 7
D
154 164anti-parallel
Strand 8
D
167 170anti-parallel
Strand 9
D
181 182anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 72first strand
Strand 2
D
20 25parallel
Strand 3
D
331 336parallel
Strand 4
D
98 105parallel
Strand 5
D
258 265parallel
Strand 6
D
236 245anti-parallel
Strand 7
D
154 164anti-parallel
Strand 8
D
202 204anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 44first strand
Strand 2
D
49 53anti-parallel
Strand 3
D
63 67anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 72first strand
Strand 2
E
20 25parallel
Strand 3
E
331 336parallel
Strand 4
E
98 105parallel
Strand 5
E
258 265parallel
Strand 6
E
236 245anti-parallel
Strand 7
E
154 164anti-parallel
Strand 8
E
167 170anti-parallel
Strand 9
E
181 182anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 72first strand
Strand 2
E
20 25parallel
Strand 3
E
331 336parallel
Strand 4
E
98 105parallel
Strand 5
E
258 265parallel
Strand 6
E
236 245anti-parallel
Strand 7
E
154 164anti-parallel
Strand 8
E
202 204anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 44first strand
Strand 2
E
49 53anti-parallel
Strand 3
E
63 67anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
185 186first strand
Strand 2
E
194 195anti-parallel
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