Analysis of interatomic Contacts of Structural Units in PDB entry:
2GM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GM3 entry

There are 6 chains in PDB entry 2GM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5ASP 175
B
 PRO 5ASP 174
C
 PRO 5ASP 175
D
 PRO 5ASP 175
E
 PRO 5ASP 175
F
 PRO 5ASP 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2GM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 38Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
80 100Right-handed alpha
Helix 4
4
A
111 124Right-handed alpha
Helix 5
5
A
145 154Right-handed alpha
Helix 6
6
A
164 168Right-handed 310
Helix 7
7
B
24 38Right-handed alpha
Helix 8
8
B
70 77Right-handed alpha
Helix 9
9
B
85 100Right-handed alpha
Helix 10
10
B
111 124Right-handed alpha
Helix 11
11
B
145 154Right-handed alpha
Helix 12
12
B
164 168Right-handed 310
Helix 13
13
C
24 38Right-handed alpha
Helix 14
14
C
70 78Right-handed alpha
Helix 15
15
C
80 100Right-handed alpha
Helix 16
16
C
111 124Right-handed alpha
Helix 17
17
C
145 154Right-handed alpha
Helix 18
18
C
164 168Right-handed 310
Helix 19
19
D
24 38Right-handed alpha
Helix 20
20
D
70 79Right-handed alpha
Helix 21
21
D
80 100Right-handed alpha
Helix 22
22
D
111 124Right-handed alpha
Helix 23
23
D
145 154Right-handed alpha
Helix 24
24
D
164 168Right-handed 310
Helix 25
25
E
24 38Right-handed alpha
Helix 26
26
E
70 78Right-handed alpha
Helix 27
27
E
80 100Right-handed alpha
Helix 28
28
E
111 124Right-handed alpha
Helix 29
29
E
145 154Right-handed alpha
Helix 30
30
E
164 168Right-handed 310
Helix 31
31
F
24 38Right-handed alpha
Helix 32
32
F
70 79Right-handed alpha
Helix 33
33
F
85 100Right-handed alpha
Helix 34
34
F
111 124Right-handed alpha
Helix 35
35
F
145 154Right-handed alpha
Helix 36
36
F
164 168Right-handed 310
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There are 3 sheets in PDB entry 2GM3. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 109first strand
Strand 2
A
46 54parallel
Strand 3
A
6 11parallel
Strand 4
A
127 132parallel
Strand 5
A
158 162parallel
Strand 6
B
158 162anti-parallel
Strand 7
B
127 132parallel
Strand 8
B
6 11parallel
Strand 9
B
46 54parallel
Strand 10
B
102 109parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 109first strand
Strand 2
D
46 54parallel
Strand 3
D
6 11parallel
Strand 4
D
127 132parallel
Strand 5
D
158 162parallel
Strand 6
C
158 162anti-parallel
Strand 7
C
127 132parallel
Strand 8
C
6 11parallel
Strand 9
C
46 54parallel
Strand 10
C
102 109parallel
Strand 11
E
67 68anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 109first strand
Strand 2
E
46 54parallel
Strand 3
E
6 11parallel
Strand 4
E
127 132parallel
Strand 5
E
158 162parallel
Strand 6
F
158 162anti-parallel
Strand 7
F
127 132parallel
Strand 8
F
6 11parallel
Strand 9
F
46 54parallel
Strand 10
F
103 109parallel
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