Analysis of interatomic Contacts of Structural Units in PDB entry:
2GM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GM4 entry

There are 8 chains in PDB entry 2GM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 C 2 T 19
Z
 A 20 A 22
Y
 T 23 G 35
J
 A 3 T 19
I
 A 20 A 22
K
 T 23 T 34
A
 MET 1ASN 183
B
 ALA 2ASN 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2GM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
45 55Right-handed alpha
Helix 4
4
A
72 87Right-handed alpha
Helix 5
5
A
102 135Right-handed alpha
Helix 6
6
A
147 157Right-handed alpha
Helix 7
7
A
160 168Right-handed alpha
Helix 8
8
A
171 181Right-handed alpha
Helix 9
9
B
15 25Right-handed alpha
Helix 10
10
B
29 31Right-handed 310
Helix 11
11
B
45 53Right-handed alpha
Helix 12
12
B
72 87Right-handed alpha
Helix 13
13
B
101 135Right-handed alpha
Helix 14
14
B
147 156Right-handed alpha
Helix 15
15
B
160 168Right-handed alpha
Helix 16
16
B
171 180Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2GM4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
33 37parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
89 92parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
3 9parallel
Strand 3
B
60 63parallel
Strand 4
B
89 92parallel
Strand 5
B
97 98anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il