Analysis of interatomic Contacts of Structural Units in PDB entry:
2GMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GMJ entry

There are 2 chains in PDB entry 2GMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 4MET 584
B
 PRO 7MET 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 2GMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
88 95Right-handed alpha
Helix 4
4
A
97 102Right-handed alpha
Helix 5
5
A
142 158Right-handed alpha
Helix 6
6
A
217 227Right-handed alpha
Helix 7
7
A
249 253Right-handed 310
Helix 8
8
A
302 311Right-handed alpha
Helix 9
9
A
316 321Right-handed alpha
Helix 10
10
A
336 341Right-handed 310
Helix 11
11
A
366 386Right-handed alpha
Helix 12
12
A
400 408Right-handed alpha
Helix 13
13
A
409 418Right-handed alpha
Helix 14
14
A
421 427Right-handed 310
Helix 15
15
A
429 442Right-handed alpha
Helix 16
16
A
458 463Right-handed 310
Helix 17
17
A
465 469Right-handed 310
Helix 18
18
A
484 491Right-handed alpha
Helix 19
19
A
510 515Right-handed alpha
Helix 20
20
A
515 520Right-handed alpha
Helix 21
21
A
523 528Right-handed alpha
Helix 22
22
A
550 553Right-handed 310
Helix 23
23
A
557 563Right-handed alpha
Helix 24
24
B
21 25Right-handed 310
Helix 25
25
B
44 62Right-handed alpha
Helix 26
26
B
90 95Right-handed alpha
Helix 27
27
B
98 102Right-handed 310
Helix 28
28
B
142 156Right-handed alpha
Helix 29
29
B
217 228Right-handed alpha
Helix 30
30
B
249 253Right-handed 310
Helix 31
31
B
302 311Right-handed alpha
Helix 32
32
B
316 321Right-handed alpha
Helix 33
33
B
336 341Right-handed 310
Helix 34
34
B
366 386Right-handed alpha
Helix 35
35
B
399 407Right-handed alpha
Helix 36
36
B
409 418Right-handed alpha
Helix 37
37
B
422 426Right-handed 310
Helix 38
38
B
429 439Right-handed alpha
Helix 39
39
B
459 463Right-handed 310
Helix 40
40
B
484 491Right-handed alpha
Helix 41
41
B
510 515Right-handed alpha
Helix 42
42
B
515 521Right-handed alpha
Helix 43
43
B
522 526Right-handed 310
Helix 44
44
B
557 563Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 2GMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
203 205parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
167 172anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
67 71parallel
Strand 3
A
38 41parallel
Strand 4
A
208 211parallel
Strand 5
A
349 351parallel
Strand 6
A
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
139 140anti-parallel
Strand 3
A
107 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
257 263parallel
Strand 3
A
115 117parallel
Strand 4
A
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
257 263parallel
Strand 3
A
272 278anti-parallel
Strand 4
A
285 293anti-parallel
Strand 5
A
238 247anti-parallel
Strand 6
A
324 334anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
194 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
568 570anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 537first strand
Strand 2
A
544 548anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
67 70parallel
Strand 3
B
38 41parallel
Strand 4
B
208 211parallel
Strand 5
B
349 351parallel
Strand 6
B
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
139 140anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
111 117anti-parallel
Strand 3
B
257 263parallel
Strand 4
B
272 278anti-parallel
Strand 5
B
285 293anti-parallel
Strand 6
B
238 247anti-parallel
Strand 7
B
324 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 172first strand
Strand 2
B
178 183anti-parallel
Strand 3
B
203 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 506first strand
Strand 2
B
568 570anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
533 536first strand
Strand 2
B
545 548anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il