Analysis of interatomic Contacts of Structural Units in PDB entry:
2GML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GML entry

There are 2 chains in PDB entry 2GML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 175
B
 ASP 1SER 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2GML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
54 68Right-handed alpha
Helix 3
3
A
81 89Right-handed alpha
Helix 4
4
A
122 131Right-handed alpha
Helix 5
5
A
160 169Right-handed alpha
Helix 6
6
B
24 29Right-handed alpha
Helix 7
7
B
54 66Right-handed alpha
Helix 8
8
B
81 89Right-handed alpha
Helix 9
9
B
122 130Right-handed alpha
Helix 10
10
B
160 169Right-handed alpha
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There are 5 sheets in PDB entry 2GML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
135 143parallel
Strand 4
A
146 147anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
70 76anti-parallel
Strand 4
A
135 143anti-parallel
Strand 5
A
46 52parallel
Strand 6
A
4 9anti-parallel
Strand 7
A
156 158anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
135 143parallel
Strand 4
B
146 147anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 108first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
70 76anti-parallel
Strand 4
B
135 143anti-parallel
Strand 5
B
46 52parallel
Strand 6
B
4 9anti-parallel
Strand 7
B
156 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il