Analysis of interatomic Contacts of Structural Units in PDB entry:
2GMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GMR entry

There are 3 chains in PDB entry 2GMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ALA 1ASN 280
M
 GLN 4ASN 300
H
 ASP 11GLU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2GMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
6 10Right-handed 310
Helix 2
2
L
31 57Right-handed alpha
Helix 3
3
L
70 74Right-handed 310
Helix 4
4
L
83 112Right-handed alpha
Helix 5
5
L
115 133Right-handed alpha
Helix 6
6
L
133 139Right-handed alpha
Helix 7
7
L
140 145Right-handed 310
Helix 8
8
L
151 163Right-handed alpha
Helix 9
9
L
164 165Right-handed 310
Helix 10
10
L
166 169Right-handed 310
Helix 11
11
L
170 199Right-handed alpha
Helix 12
12
L
208 221Right-handed alpha
Helix 13
13
L
225 250Right-handed alpha
Helix 14
14
L
258 262Right-handed 310
Helix 15
15
L
263 268Right-handed alpha
Helix 16
16
M
25 29Right-handed 310
Helix 17
17
M
38 42Right-handed 310
Helix 18
18
M
53 77Right-handed alpha
Helix 19
19
M
81 88Right-handed alpha
Helix 20
20
M
98 102Right-handed 310
Helix 21
21
M
108 111Right-handed 310
Helix 22
22
M
112 141Right-handed alpha
Helix 23
23
M
144 162Right-handed alpha
Helix 24
24
M
162 168Right-handed alpha
Helix 25
25
M
170 174Right-handed 310
Helix 26
26
M
178 193Right-handed alpha
Helix 27
27
M
195 198Right-handed 310
Helix 28
28
M
199 226Right-handed alpha
Helix 29
29
M
227 230Right-handed 310
Helix 30
30
M
233 240Right-handed alpha
Helix 31
31
M
242 257Right-handed alpha
Helix 32
32
M
263 286Right-handed alpha
Helix 33
33
M
293 300Right-handed alpha
Helix 34
34
H
11 35Right-handed alpha
Helix 35
35
H
103 108Right-handed alpha
Helix 36
36
H
109 113Right-handed 310
Helix 37
37
H
135 137Right-handed 310
Helix 38
38
H
194 196Right-handed 310
Helix 39
39
H
209 213Right-handed 310
Helix 40
40
H
226 239Right-handed alpha
Helix 41
41
H
239 244Right-handed alpha
Helix 42
42
H
245 248Right-handed 310
Helix 43
43
H
250 256Right-handed alpha
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There are 6 sheets in PDB entry 2GMR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
25 26first strand
Strand 2
L
29 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
11 13first strand
Strand 2
H
141 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 65first strand
Strand 2
H
72 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
87 89first strand
Strand 2
H
98 100anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 133first strand
Strand 2
H
160 170anti-parallel
Strand 3
H
175 182anti-parallel
Strand 4
H
188 192anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 133first strand
Strand 2
H
160 170anti-parallel
Strand 3
H
152 154anti-parallel
Strand 4
H
203 204parallel
Strand 5
H
197 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il