Analysis of interatomic Contacts of Structural Units in PDB entry:
2GMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GMU entry

There are 2 chains in PDB entry 2GMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 388
B
 GLY -1LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2GMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 26Right-handed alpha
Helix 2
2
A
31 46Right-handed alpha
Helix 3
3
A
55 70Right-handed alpha
Helix 4
4
A
88 98Right-handed alpha
Helix 5
5
A
115 123Right-handed alpha
Helix 6
6
A
135 138Right-handed 310
Helix 7
7
A
141 150Right-handed alpha
Helix 8
8
A
202 214Right-handed alpha
Helix 9
9
A
234 239Right-handed alpha
Helix 10
10
A
252 285Right-handed alpha
Helix 11
11
A
315 326Right-handed alpha
Helix 12
12
A
337 340Right-handed 310
Helix 13
13
A
341 346Right-handed alpha
Helix 14
14
A
356 365Right-handed alpha
Helix 15
15
A
376 387Right-handed alpha
Helix 16
16
B
12 26Right-handed alpha
Helix 17
17
B
31 46Right-handed alpha
Helix 18
18
B
55 67Right-handed alpha
Helix 19
19
B
88 98Right-handed alpha
Helix 20
20
B
115 123Right-handed alpha
Helix 21
21
B
135 138Right-handed 310
Helix 22
22
B
141 150Right-handed alpha
Helix 23
23
B
202 214Right-handed alpha
Helix 24
24
B
234 239Right-handed alpha
Helix 25
25
B
252 285Right-handed alpha
Helix 26
26
B
315 326Right-handed alpha
Helix 27
27
B
337 340Right-handed 310
Helix 28
28
B
341 346Right-handed alpha
Helix 29
29
B
356 365Right-handed alpha
Helix 30
30
B
376 387Right-handed alpha
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There are 8 sheets in PDB entry 2GMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
179 183anti-parallel
Strand 4
A
155 159parallel
Strand 5
A
127 133parallel
Strand 6
A
80 84parallel
Strand 7
A
101 105parallel
Strand 8
A
350 352parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
171 172anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
229 230anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
303 308anti-parallel
Strand 3
A
366 370anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
196 200anti-parallel
Strand 3
B
179 183anti-parallel
Strand 4
B
155 159parallel
Strand 5
B
127 133parallel
Strand 6
B
80 84parallel
Strand 7
B
101 105parallel
Strand 8
B
350 352parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
171 172anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
229 230anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 292first strand
Strand 2
B
303 308anti-parallel
Strand 3
B
366 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il