Analysis of interatomic Contacts of Structural Units in PDB entry:
2GMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GMX entry

There are 4 chains in PDB entry 2GMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8HIS 365
F
 PRO 554PHE 563
B
 ASP 7GLU 364
G
 PRO 554PHE 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2GMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 80Right-handed alpha
Helix 2
2
A
114 118Right-handed 310
Helix 3
3
A
124 144Right-handed alpha
Helix 4
4
A
153 157Right-handed 310
Helix 5
5
A
193 198Right-handed alpha
Helix 6
6
A
205 221Right-handed alpha
Helix 7
7
A
229 242Right-handed alpha
Helix 8
8
A
245 246Right-handed 310
Helix 9
9
A
248 251Right-handed 310
Helix 10
10
A
253 263Right-handed alpha
Helix 11
11
A
270 275Right-handed alpha
Helix 12
12
A
290 302Right-handed alpha
Helix 13
13
A
305 309Right-handed 310
Helix 14
14
A
311 317Right-handed alpha
Helix 15
15
A
321 325Right-handed 310
Helix 16
16
A
326 330Right-handed 310
Helix 17
17
A
348 358Right-handed alpha
Helix 18
18
B
23 27Right-handed 310
Helix 19
19
B
64 80Right-handed alpha
Helix 20
20
B
97 101Right-handed 310
Helix 21
21
B
115 120Right-handed alpha
Helix 22
22
B
124 144Right-handed alpha
Helix 23
23
B
153 155Right-handed 310
Helix 24
24
B
188 192Right-handed 310
Helix 25
25
B
193 199Right-handed alpha
Helix 26
26
B
204 216Right-handed alpha
Helix 27
27
B
216 221Right-handed alpha
Helix 28
28
B
231 241Right-handed alpha
Helix 29
29
B
245 246Right-handed 310
Helix 30
30
B
248 252Right-handed 310
Helix 31
31
B
255 261Right-handed alpha
Helix 32
32
B
290 292Right-handed 310
Helix 33
33
B
293 302Right-handed alpha
Helix 34
34
B
311 316Right-handed alpha
Helix 35
35
B
318 323Right-handed alpha
Helix 36
36
B
348 362Right-handed alpha
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There are 8 sheets in PDB entry 2GMX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
20 23anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
31 33anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
105 108anti-parallel
Strand 5
A
89 92anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
39 41anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
50 51anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
106 108anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
157 159anti-parallel
Strand 3
B
165 167anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
174 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il