Analysis of interatomic Contacts of Structural Units in PDB entry:
2GN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GN0 entry

There are 8 chains in PDB entry 2GN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET -1	PHE 57
A	ILE 59	GLY 325
B	ASP 6	PHE 57
B	ILE 59	GLY 325
C	GLY -2	PHE 57
C	ILE 59	GLY 325
D	ASP 6	PHE 57
D	ILE 59	GLY 325

There are 74 helices in PDB entry 2GN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	-1	7	Right-handed alpha
Helix 2	2	A	10	22	Right-handed alpha
Helix 3	3	A	33	41	Right-handed alpha
Helix 4	4	A	50	56	Right-handed 310
Helix 5	5	A	57	69	Right-handed alpha
Helix 6	6	A	70	76	Right-handed alpha
Helix 7	7	A	84	98	Right-handed alpha
Helix 8	8	A	110	121	Right-handed alpha
Helix 9	9	A	130	146	Right-handed alpha
Helix 10	10	A	155	173	Right-handed alpha
Helix 11	11	A	186	200	Right-handed alpha
Helix 12	12	A	214	223	Right-handed alpha
Helix 13	13	A	235	239	Right-handed 310
Helix 14	14	A	244	255	Right-handed alpha
Helix 15	15	A	262	278	Right-handed alpha
Helix 16	16	A	283	285	Right-handed 310
Helix 17	17	A	286	294	Right-handed alpha
Helix 18	18	A	297	302	Right-handed alpha
Helix 19	19	A	316	325	Right-handed alpha
Helix 20	20	B	10	22	Right-handed alpha
Helix 21	21	B	33	41	Right-handed alpha
Helix 22	22	B	50	56	Right-handed 310
Helix 23	23	B	57	69	Right-handed alpha
Helix 24	24	B	70	76	Right-handed alpha
Helix 25	25	B	84	98	Right-handed alpha
Helix 26	26	B	110	120	Right-handed alpha
Helix 27	27	B	130	146	Right-handed alpha
Helix 28	28	B	155	173	Right-handed alpha
Helix 29	29	B	186	200	Right-handed alpha
Helix 30	30	B	214	223	Right-handed alpha
Helix 31	31	B	235	239	Right-handed 310
Helix 32	32	B	244	255	Right-handed alpha
Helix 33	33	B	262	278	Right-handed alpha
Helix 34	34	B	283	285	Right-handed 310
Helix 35	35	B	286	295	Right-handed alpha
Helix 36	36	B	297	302	Right-handed alpha
Helix 37	37	B	316	325	Right-handed alpha
Helix 38	38	C	-2	7	Right-handed alpha
Helix 39	39	C	10	22	Right-handed alpha
Helix 40	40	C	34	41	Right-handed alpha
Helix 41	41	C	50	56	Right-handed 310
Helix 42	42	C	57	69	Right-handed alpha
Helix 43	43	C	70	77	Right-handed alpha
Helix 44	44	C	84	98	Right-handed alpha
Helix 45	45	C	110	121	Right-handed alpha
Helix 46	46	C	130	146	Right-handed alpha
Helix 47	47	C	155	173	Right-handed alpha
Helix 48	48	C	186	200	Right-handed alpha
Helix 49	49	C	214	223	Right-handed alpha
Helix 50	50	C	235	239	Right-handed 310
Helix 51	51	C	244	255	Right-handed alpha
Helix 52	52	C	262	276	Right-handed alpha
Helix 53	53	C	283	285	Right-handed 310
Helix 54	54	C	286	295	Right-handed alpha
Helix 55	55	C	297	302	Right-handed alpha
Helix 56	56	C	316	325	Right-handed alpha
Helix 57	57	D	10	22	Right-handed alpha
Helix 58	58	D	33	41	Right-handed alpha
Helix 59	59	D	50	57	Right-handed 310
Helix 60	60	D	58	69	Right-handed alpha
Helix 61	61	D	70	76	Right-handed alpha
Helix 62	62	D	84	98	Right-handed alpha
Helix 63	63	D	110	120	Right-handed alpha
Helix 64	64	D	130	146	Right-handed alpha
Helix 65	65	D	155	173	Right-handed alpha
Helix 66	66	D	186	198	Right-handed alpha
Helix 67	67	D	214	223	Right-handed alpha
Helix 68	68	D	235	239	Right-handed 310
Helix 69	69	D	244	255	Right-handed alpha
Helix 70	70	D	262	276	Right-handed alpha
Helix 71	71	D	283	285	Right-handed 310
Helix 72	72	D	286	295	Right-handed alpha
Helix 73	73	D	297	302	Right-handed alpha
Helix 74	74	D	316	325	Right-handed alpha

There are 8 sheets in PDB entry 2GN0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	305	310	parallel
Strand 3	A	178	182	parallel
Strand 4	A	204	210	parallel
Strand 5	A	257	261	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	126	first strand
Strand 2	A	101	105	parallel
Strand 3	A	78	81	parallel
Strand 4	A	148	149	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	305	310	parallel
Strand 3	B	178	182	parallel
Strand 4	B	204	210	parallel
Strand 5	B	257	261	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	101	105	parallel
Strand 3	B	78	81	parallel
Strand 4	B	148	149	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	43	48	anti-parallel
Strand 3	C	305	310	parallel
Strand 4	C	178	182	parallel
Strand 5	C	204	210	parallel
Strand 6	C	257	261	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	101	105	parallel
Strand 3	C	78	81	parallel
Strand 4	C	148	149	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	305	310	parallel
Strand 3	D	178	182	parallel
Strand 4	D	204	210	parallel
Strand 5	D	257	261	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	126	first strand
Strand 2	D	101	105	parallel
Strand 3	D	78	81	parallel
Strand 4	D	148	149	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GN0