Analysis of interatomic Contacts of Structural Units in PDB entry:
2GN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GN4 entry

There are 2 chains in PDB entry 2GN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5LEU 333
B
 MET 7LEU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2GN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 34Right-handed alpha
Helix 2
2
A
45 57Right-handed alpha
Helix 3
3
A
70 78Right-handed alpha
Helix 4
4
A
92 99Right-handed alpha
Helix 5
5
A
99 121Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
139 155Right-handed alpha
Helix 8
8
A
156 158Right-handed 310
Helix 9
9
A
180 192Right-handed alpha
Helix 10
10
A
209 224Right-handed alpha
Helix 11
11
A
239 247Right-handed alpha
Helix 12
12
A
269 274Right-handed 310
Helix 13
13
A
325 331Right-handed alpha
Helix 14
14
B
20 34Right-handed alpha
Helix 15
15
B
45 56Right-handed alpha
Helix 16
16
B
70 78Right-handed alpha
Helix 17
17
B
92 99Right-handed alpha
Helix 18
18
B
99 121Right-handed alpha
Helix 19
19
B
133 135Right-handed 310
Helix 20
20
B
139 155Right-handed alpha
Helix 21
21
B
156 158Right-handed 310
Helix 22
22
B
180 191Right-handed alpha
Helix 23
23
B
209 224Right-handed alpha
Helix 24
24
B
239 247Right-handed alpha
Helix 25
25
B
269 274Right-handed 310
Helix 26
26
B
325 331Right-handed alpha
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There are 8 sheets in PDB entry 2GN4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
38 43parallel
Strand 3
A
12 16parallel
Strand 4
A
83 86parallel
Strand 5
A
125 129parallel
Strand 6
A
165 169parallel
Strand 7
A
229 232parallel
Strand 8
A
282 285anti-parallel
Strand 9
A
276 278anti-parallel
Strand 10
A
307 308anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
204 208parallel
Strand 3
A
236 238anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
252 254parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
315 316anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
38 43parallel
Strand 3
B
12 16parallel
Strand 4
B
83 86parallel
Strand 5
B
125 131parallel
Strand 6
B
165 171parallel
Strand 7
B
229 232parallel
Strand 8
B
282 285anti-parallel
Strand 9
B
276 278anti-parallel
Strand 10
B
307 308anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
204 208parallel
Strand 3
B
236 238anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
252 254parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 268first strand
Strand 2
B
315 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il