Analysis of interatomic Contacts of Structural Units in PDB entry:
2GNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GNP entry

There is 1 chain in PDB entry 2GNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 56ASP 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2GNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 73Right-handed alpha
Helix 2
2
A
87 107Right-handed alpha
Helix 3
3
A
118 128Right-handed alpha
Helix 4
4
A
149 152Right-handed 310
Helix 5
5
A
153 166Right-handed alpha
Helix 6
6
A
180 189Right-handed alpha
Helix 7
7
A
193 200Right-handed alpha
Helix 8
8
A
214 220Right-handed alpha
Helix 9
9
A
226 236Right-handed alpha
Helix 10
10
A
255 260Right-handed alpha
Helix 11
11
A
266 271Right-handed alpha
Helix 12
12
A
282 284Right-handed 310
Helix 13
13
A
285 295Right-handed alpha
Helix 14
14
A
305 317Right-handed alpha
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There are 2 sheets in PDB entry 2GNP. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
300 304parallel
Strand 3
A
275 279parallel
Strand 4
A
205 208parallel
Strand 5
A
112 115parallel
Strand 6
A
137 140parallel
Strand 7
A
168 169parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
240 242anti-parallel
Strand 3
A
245 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il