Analysis of interatomic Contacts of Structural Units in PDB entry:
2GNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GNX entry

There is 1 chain in PDB entry 2GNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 101LYS 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2GNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 117Right-handed alpha
Helix 2
2
A
131 149Right-handed alpha
Helix 3
3
A
150 152Right-handed 310
Helix 4
4
A
156 165Right-handed alpha
Helix 5
5
A
168 172Right-handed 310
Helix 6
6
A
182 205Right-handed alpha
Helix 7
7
A
208 232Right-handed alpha
Helix 8
8
A
252 273Right-handed alpha
Helix 9
9
A
273 280Right-handed alpha
Helix 10
10
A
282 293Right-handed alpha
Helix 11
11
A
296 309Right-handed alpha
Helix 12
12
A
357 359Right-handed 310
Helix 13
13
A
360 371Right-handed alpha
Helix 14
14
A
371 377Right-handed alpha
Helix 15
15
A
416 429Right-handed alpha
Helix 16
16
A
431 438Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2GNX.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 352first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
402 408anti-parallel
Strand 4
A
391 399anti-parallel
Strand 5
A
381 386anti-parallel
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