Analysis of interatomic Contacts of Structural Units in PDB entry:
2GOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GOK entry

There are 2 chains in PDB entry 2GOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17SER 420
B
 ALA 17SER 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2GOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 65Right-handed 310
Helix 2
2
A
95 104Right-handed alpha
Helix 3
3
A
107 114Right-handed alpha
Helix 4
4
A
117 128Right-handed alpha
Helix 5
5
A
129 146Right-handed alpha
Helix 6
6
A
161 176Right-handed alpha
Helix 7
7
A
194 198Right-handed 310
Helix 8
8
A
200 208Right-handed alpha
Helix 9
9
A
208 219Right-handed alpha
Helix 10
10
A
235 249Right-handed alpha
Helix 11
11
A
264 272Right-handed alpha
Helix 12
12
A
284 295Right-handed alpha
Helix 13
13
A
301 308Right-handed alpha
Helix 14
14
A
315 323Right-handed alpha
Helix 15
15
A
341 354Right-handed alpha
Helix 16
16
A
356 364Right-handed alpha
Helix 17
17
A
365 372Right-handed alpha
Helix 18
18
A
398 403Right-handed alpha
Helix 19
19
B
58 60Right-handed 310
Helix 20
20
B
61 65Right-handed 310
Helix 21
21
B
95 104Right-handed alpha
Helix 22
22
B
107 114Right-handed alpha
Helix 23
23
B
117 127Right-handed alpha
Helix 24
24
B
129 146Right-handed alpha
Helix 25
25
B
161 177Right-handed alpha
Helix 26
26
B
194 198Right-handed 310
Helix 27
27
B
200 208Right-handed alpha
Helix 28
28
B
208 219Right-handed alpha
Helix 29
29
B
235 249Right-handed alpha
Helix 30
30
B
264 272Right-handed alpha
Helix 31
31
B
284 295Right-handed alpha
Helix 32
32
B
301 308Right-handed alpha
Helix 33
33
B
315 323Right-handed alpha
Helix 34
34
B
341 354Right-handed alpha
Helix 35
35
B
356 364Right-handed alpha
Helix 36
36
B
365 372Right-handed alpha
Helix 37
37
B
398 403Right-handed alpha
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There are 8 sheets in PDB entry 2GOK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
38 47anti-parallel
Strand 3
A
18 27anti-parallel
Strand 4
A
69 72parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
38 47anti-parallel
Strand 3
A
18 27anti-parallel
Strand 4
A
77 80parallel
Strand 5
A
389 392anti-parallel
Strand 6
A
409 414anti-parallel
Strand 7
A
417 418anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
149 155parallel
Strand 3
A
182 187parallel
Strand 4
A
224 225parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
254 257parallel
Strand 3
A
276 279parallel
Strand 4
A
297 300parallel
Strand 5
A
326 328parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 56first strand
Strand 2
B
38 47anti-parallel
Strand 3
B
18 27anti-parallel
Strand 4
B
69 72parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 56first strand
Strand 2
B
38 47anti-parallel
Strand 3
B
18 27anti-parallel
Strand 4
B
77 80parallel
Strand 5
B
389 392anti-parallel
Strand 6
B
409 414anti-parallel
Strand 7
B
417 418anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
149 155parallel
Strand 3
B
182 187parallel
Strand 4
B
224 225parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
254 257parallel
Strand 3
B
276 279parallel
Strand 4
B
297 300parallel
Strand 5
B
326 328parallel
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