Analysis of interatomic Contacts of Structural Units in PDB entry:
2GOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GOO entry

There are 6 chains in PDB entry 2GOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ARG 114
B
 PRO 34VAL 118
C
 THR 8PRO 99
D
 LYS 11ARG 114
E
 LEU 33ILE 120
F
 GLU 7PRO 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2GOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 56Right-handed 310
Helix 2
2
A
58 71Right-handed alpha
Helix 3
3
B
82 89Right-handed alpha
Helix 4
4
C
17 22Right-handed alpha
Helix 5
5
C
63 67Right-handed 310
Helix 6
6
D
23 27Right-handed alpha
Helix 7
7
D
52 56Right-handed 310
Helix 8
8
D
58 71Right-handed alpha
Helix 9
9
E
82 89Right-handed alpha
Helix 10
10
E
106 111Right-handed 310
Helix 11
11
F
17 22Right-handed alpha
Helix 12
12
F
63 67Right-handed 310
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There are 14 sheets in PDB entry 2GOO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
42 44anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
37 39anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
78 92anti-parallel
Strand 3
A
98 114anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
52 55anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 78first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
97 102anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 30first strand
Strand 2
C
10 15anti-parallel
Strand 3
C
51 61anti-parallel
Strand 4
C
39 48anti-parallel
Strand 5
C
82 86anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
95 97parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
42 44anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 22first strand
Strand 2
D
37 39anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
78 92anti-parallel
Strand 3
D
98 114anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 39first strand
Strand 2
E
52 55anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 78first strand
Strand 2
E
58 65anti-parallel
Strand 3
E
97 102anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 30first strand
Strand 2
F
10 15anti-parallel
Strand 3
F
51 61anti-parallel
Strand 4
F
39 48anti-parallel
Strand 5
F
82 86anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
72 74first strand
Strand 2
F
95 97parallel
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