Analysis of interatomic Contacts of Structural Units in PDB entry:
2GOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GOP entry

There are 2 chains in PDB entry 2GOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10LEU 347
B
 LYS 13PRO 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2GOP

There are 14 sheets in PDB entry 2GOP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 23first strand
Strand 2
A
26 35anti-parallel
Strand 3
A
40 49anti-parallel
Strand 4
A
55 59anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
72 79anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
96 103anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
151 158anti-parallel
Strand 4
A
163 171anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
200 206anti-parallel
Strand 4
A
209 217anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
229 233anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
254 256anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 271first strand
Strand 2
A
274 281anti-parallel
Strand 3
A
284 290anti-parallel
Strand 4
A
294 298anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
325 329anti-parallel
Strand 4
A
333 335anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 23first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
55 59anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 66first strand
Strand 2
B
72 79anti-parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
97 103anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 111first strand
Strand 2
B
117 123anti-parallel
Strand 3
B
151 158anti-parallel
Strand 4
B
163 171anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
182 188anti-parallel
Strand 3
B
200 206anti-parallel
Strand 4
B
209 217anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 224first strand
Strand 2
B
229 233anti-parallel
Strand 3
B
245 249anti-parallel
Strand 4
B
254 256anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 271first strand
Strand 2
B
274 281anti-parallel
Strand 3
B
284 290anti-parallel
Strand 4
B
294 298anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 309first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
325 329anti-parallel
Strand 4
B
333 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il