Analysis of interatomic Contacts of Structural Units in PDB entry:
2GP1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GP1 entry

There are 7 chains in PDB entry 2GP1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 119	SER 383
B	MET 119	SER 383
C	MET 119	SER 383
D	MET 119	SER 383
E	MET 119	SER 383
F	MET 119	SER 383
G	MET 119	SER 383

There are 71 helices in PDB entry 2GP1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	133	137	Right-handed 310
Helix 2	2	A	194	199	Right-handed alpha
Helix 3	3	A	200	225	Right-handed alpha
Helix 4	4	A	235	240	Right-handed alpha
Helix 5	5	A	244	248	Right-handed 310
Helix 6	6	A	253	265	Right-handed alpha
Helix 7	7	A	266	269	Right-handed 310
Helix 8	8	A	278	287	Right-handed alpha
Helix 9	9	A	328	332	Right-handed alpha
Helix 10	10	A	349	353	Right-handed 310
Helix 11	11	A	372	374	Right-handed 310
Helix 12	12	B	133	138	Right-handed alpha
Helix 13	13	B	203	218	Right-handed alpha
Helix 14	14	B	218	225	Right-handed alpha
Helix 15	15	B	235	240	Right-handed alpha
Helix 16	16	B	244	248	Right-handed 310
Helix 17	17	B	253	267	Right-handed alpha
Helix 18	18	B	278	287	Right-handed alpha
Helix 19	19	B	328	332	Right-handed alpha
Helix 20	20	B	351	356	Right-handed alpha
Helix 21	21	B	372	375	Right-handed 310
Helix 22	22	C	133	138	Right-handed alpha
Helix 23	23	C	194	199	Right-handed alpha
Helix 24	24	C	202	218	Right-handed alpha
Helix 25	25	C	235	240	Right-handed alpha
Helix 26	26	C	244	248	Right-handed 310
Helix 27	27	C	253	265	Right-handed alpha
Helix 28	28	C	266	269	Right-handed 310
Helix 29	29	C	278	287	Right-handed alpha
Helix 30	30	C	328	332	Right-handed alpha
Helix 31	31	C	372	374	Right-handed 310
Helix 32	32	D	134	138	Right-handed 310
Helix 33	33	D	193	200	Right-handed alpha
Helix 34	34	D	202	224	Right-handed alpha
Helix 35	35	D	235	240	Right-handed alpha
Helix 36	36	D	244	248	Right-handed 310
Helix 37	37	D	253	265	Right-handed alpha
Helix 38	38	D	266	269	Right-handed 310
Helix 39	39	D	278	286	Right-handed alpha
Helix 40	40	D	307	311	Right-handed 310
Helix 41	41	D	329	332	Right-handed 310
Helix 42	42	D	351	356	Right-handed alpha
Helix 43	43	D	372	374	Right-handed 310
Helix 44	44	E	193	200	Right-handed alpha
Helix 45	45	E	202	224	Right-handed alpha
Helix 46	46	E	235	240	Right-handed alpha
Helix 47	47	E	244	248	Right-handed 310
Helix 48	48	E	253	267	Right-handed alpha
Helix 49	49	E	278	287	Right-handed alpha
Helix 50	50	E	329	331	Right-handed 310
Helix 51	51	E	351	356	Right-handed alpha
Helix 52	52	E	372	374	Right-handed 310
Helix 53	53	F	193	197	Right-handed 310
Helix 54	54	F	202	223	Right-handed alpha
Helix 55	55	F	235	240	Right-handed alpha
Helix 56	56	F	244	248	Right-handed 310
Helix 57	57	F	253	265	Right-handed alpha
Helix 58	58	F	266	269	Right-handed 310
Helix 59	59	F	278	287	Right-handed alpha
Helix 60	60	F	329	332	Right-handed 310
Helix 61	61	F	351	356	Right-handed alpha
Helix 62	62	F	372	374	Right-handed 310
Helix 63	63	G	132	138	Right-handed alpha
Helix 64	64	G	193	199	Right-handed alpha
Helix 65	65	G	202	223	Right-handed alpha
Helix 66	66	G	235	240	Right-handed alpha
Helix 67	67	G	244	248	Right-handed 310
Helix 68	68	G	253	267	Right-handed alpha
Helix 69	69	G	278	286	Right-handed alpha
Helix 70	70	G	328	332	Right-handed alpha
Helix 71	71	G	351	356	Right-handed alpha

There are 33 sheets in PDB entry 2GP1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	333	337	parallel
Strand 3	A	368	370	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	157	first strand
Strand 2	A	173	182	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	363	366	anti-parallel
Strand 3	A	339	342	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	376	380	parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	274	277	anti-parallel
Strand 5	A	311	315	parallel
Strand 6	A	307	308	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	333	337	parallel
Strand 3	B	368	370	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	157	first strand
Strand 2	B	173	177	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	360	366	anti-parallel
Strand 3	B	339	345	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	377	380	parallel
Strand 3	B	323	327	anti-parallel
Strand 4	B	274	277	anti-parallel
Strand 5	B	311	315	parallel
Strand 6	B	307	308	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	333	337	parallel
Strand 3	C	368	370	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	180	182	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	157	first strand
Strand 2	C	173	177	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	362	366	anti-parallel
Strand 3	C	339	343	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	357	359	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	376	380	parallel
Strand 3	C	323	327	anti-parallel
Strand 4	C	274	276	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	C	311	313	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	142	first strand
Strand 2	D	334	346	parallel
Strand 3	D	359	369	anti-parallel
Strand 4	D	184	190	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	149	first strand
Strand 2	D	180	182	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	157	first strand
Strand 2	D	173	177	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	376	380	parallel
Strand 3	D	323	327	anti-parallel
Strand 4	D	274	277	anti-parallel
Strand 5	D	313	315	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	142	first strand
Strand 2	E	333	337	parallel
Strand 3	E	368	370	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	180	182	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	157	first strand
Strand 2	E	173	177	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	192	first strand
Strand 2	E	358	366	anti-parallel
Strand 3	E	339	343	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	242	first strand
Strand 2	E	376	380	parallel
Strand 3	E	323	327	anti-parallel
Strand 4	E	274	276	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	142	first strand
Strand 2	F	334	337	parallel
Strand 3	F	368	369	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	157	first strand
Strand 2	F	173	182	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	185	first strand
Strand 2	F	358	366	anti-parallel
Strand 3	F	188	192	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	185	first strand
Strand 2	F	358	366	anti-parallel
Strand 3	F	339	345	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	242	first strand
Strand 2	F	376	380	parallel
Strand 3	F	323	327	anti-parallel
Strand 4	F	274	276	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	142	first strand
Strand 2	G	333	343	parallel
Strand 3	G	362	370	anti-parallel
Strand 4	G	184	188	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	157	first strand
Strand 2	G	173	182	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	242	first strand
Strand 2	G	376	380	parallel
Strand 3	G	323	327	anti-parallel
Strand 4	G	274	276	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	311	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GP1

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GP1