Analysis of interatomic Contacts of Structural Units in PDB entry:
2GP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GP4 entry

There are 2 chains in PDB entry 2GP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0TYR 608
B
 HIS 0TYR 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2GP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 32Right-handed alpha
Helix 2
2
A
120 123Right-handed 310
Helix 3
3
A
124 141Right-handed alpha
Helix 4
4
A
158 167Right-handed alpha
Helix 5
5
A
202 210Right-handed alpha
Helix 6
6
A
214 224Right-handed alpha
Helix 7
7
A
231 237Right-handed alpha
Helix 8
8
A
243 247Right-handed 310
Helix 9
9
A
251 268Right-handed alpha
Helix 10
10
A
277 282Right-handed alpha
Helix 11
11
A
283 297Right-handed alpha
Helix 12
12
A
301 314Right-handed alpha
Helix 13
13
A
319 328Right-handed alpha
Helix 14
14
A
336 340Right-handed 310
Helix 15
15
A
343 351Right-handed alpha
Helix 16
16
A
351 363Right-handed alpha
Helix 17
17
A
378 381Right-handed 310
Helix 18
18
A
438 441Right-handed 310
Helix 19
19
A
453 455Right-handed 310
Helix 20
20
A
456 463Right-handed alpha
Helix 21
21
A
478 483Right-handed alpha
Helix 22
22
A
490 500Right-handed alpha
Helix 23
23
A
528 532Right-handed 310
Helix 24
24
A
533 537Right-handed 310
Helix 25
25
A
558 565Right-handed alpha
Helix 26
26
A
572 576Right-handed 310
Helix 27
27
A
580 583Right-handed 310
Helix 28
28
A
584 590Right-handed alpha
Helix 29
29
A
593 597Right-handed 310
Helix 30
30
A
603 607Right-handed 310
Helix 31
31
B
2 32Right-handed alpha
Helix 32
32
B
120 123Right-handed 310
Helix 33
33
B
124 141Right-handed alpha
Helix 34
34
B
156 167Right-handed alpha
Helix 35
35
B
231 237Right-handed alpha
Helix 36
36
B
251 268Right-handed alpha
Helix 37
37
B
277 282Right-handed alpha
Helix 38
38
B
283 297Right-handed alpha
Helix 39
39
B
302 314Right-handed alpha
Helix 40
40
B
319 328Right-handed alpha
Helix 41
41
B
336 340Right-handed 310
Helix 42
42
B
343 351Right-handed alpha
Helix 43
43
B
351 363Right-handed alpha
Helix 44
44
B
378 381Right-handed 310
Helix 45
45
B
438 441Right-handed 310
Helix 46
46
B
453 455Right-handed 310
Helix 47
47
B
456 463Right-handed alpha
Helix 48
48
B
478 483Right-handed alpha
Helix 49
49
B
490 499Right-handed alpha
Helix 50
50
B
528 532Right-handed 310
Helix 51
51
B
533 538Right-handed 310
Helix 52
52
B
558 563Right-handed alpha
Helix 53
53
B
572 576Right-handed 310
Helix 54
54
B
580 583Right-handed 310
Helix 55
55
B
584 589Right-handed alpha
Helix 56
56
B
593 597Right-handed 310
Helix 57
57
B
603 607Right-handed 310
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There are 8 sheets in PDB entry 2GP4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
173 175parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
375 376anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 388first strand
Strand 2
A
391 396anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 425first strand
Strand 2
A
428 433anti-parallel
Strand 3
A
521 526anti-parallel
Strand 4
A
504 508parallel
Strand 5
A
470 474parallel
Strand 6
A
443 451parallel
Strand 7
A
543 547anti-parallel
Strand 8
A
552 555anti-parallel
Strand 9
A
420 425parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
173 175parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 372first strand
Strand 2
B
375 376anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 388first strand
Strand 2
B
391 396anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 425first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
521 526anti-parallel
Strand 4
B
504 508parallel
Strand 5
B
470 474parallel
Strand 6
B
443 451parallel
Strand 7
B
543 547anti-parallel
Strand 8
B
552 555anti-parallel
Strand 9
B
420 425parallel
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