Analysis of interatomic Contacts of Structural Units in PDB entry:
2GP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GP5 entry

There are 2 chains in PDB entry 2GP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PRO 348
B
 PRO 10PRO 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2GP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
94 103Right-handed alpha
Helix 5
5
A
113 125Right-handed alpha
Helix 6
6
A
155 157Right-handed 310
Helix 7
7
A
158 165Right-handed alpha
Helix 8
8
A
190 194Right-handed 310
Helix 9
9
A
212 214Right-handed 310
Helix 10
10
A
215 227Right-handed alpha
Helix 11
11
A
227 234Right-handed alpha
Helix 12
12
A
236 241Right-handed 310
Helix 13
13
A
246 253Right-handed alpha
Helix 14
14
A
295 303Right-handed alpha
Helix 15
15
A
317 325Right-handed alpha
Helix 16
16
A
325 334Right-handed alpha
Helix 17
17
B
20 25Right-handed alpha
Helix 18
18
B
26 37Right-handed alpha
Helix 19
19
B
38 42Right-handed 310
Helix 20
20
B
94 103Right-handed alpha
Helix 21
21
B
113 125Right-handed alpha
Helix 22
22
B
155 157Right-handed 310
Helix 23
23
B
158 165Right-handed alpha
Helix 24
24
B
190 194Right-handed 310
Helix 25
25
B
212 214Right-handed 310
Helix 26
26
B
215 227Right-handed alpha
Helix 27
27
B
227 234Right-handed alpha
Helix 28
28
B
236 241Right-handed 310
Helix 29
29
B
246 253Right-handed alpha
Helix 30
30
B
295 303Right-handed alpha
Helix 31
31
B
317 325Right-handed alpha
Helix 32
32
B
325 334Right-handed alpha
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There are 6 sheets in PDB entry 2GP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
44 47parallel
Strand 3
A
267 270anti-parallel
Strand 4
A
195 203anti-parallel
Strand 5
A
284 291anti-parallel
Strand 6
A
175 179anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
71 78anti-parallel
Strand 9
A
81 88anti-parallel
Strand 10
A
243 245anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
92 93anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
258 262anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
44 47parallel
Strand 3
B
267 270anti-parallel
Strand 4
B
195 203anti-parallel
Strand 5
B
284 291anti-parallel
Strand 6
B
175 179anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
71 78anti-parallel
Strand 9
B
81 88anti-parallel
Strand 10
B
243 245anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
92 93anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 188first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
258 262anti-parallel
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