Analysis of interatomic Contacts of Structural Units in PDB entry:
2GPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GPJ entry

There is 1 chain in PDB entry 2GPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5GLY 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2GPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 33Right-handed 310
Helix 2
2
A
81 90Right-handed alpha
Helix 3
3
A
122 133Right-handed alpha
Helix 4
4
A
147 151Right-handed 310
Helix 5
5
A
174 182Right-handed alpha
Helix 6
6
A
199 213Right-handed alpha
Helix 7
7
A
216 218Right-handed 310
Helix 8
8
A
231 247Right-handed alpha
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There are 2 sheets in PDB entry 2GPJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
8 19anti-parallel
Strand 5
A
22 28anti-parallel
Strand 6
A
69 75anti-parallel
Strand 7
A
64 66anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 166first strand
Strand 2
A
138 145parallel
Strand 3
A
113 119parallel
Strand 4
A
191 198parallel
Strand 5
A
220 226parallel
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