Analysis of interatomic Contacts of Structural Units in PDB entry:
2GPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GPP entry

There are 4 chains in PDB entry 2GPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 233LYS 457
B
 PRO 233ALA 456
C
 SER 378THR 388
D
 SER 378PRO 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2GPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
235 242Right-handed alpha
Helix 2
2
A
260 285Right-handed alpha
Helix 3
3
A
293 317Right-handed alpha
Helix 4
4
A
333 341Right-handed alpha
Helix 5
5
A
342 359Right-handed alpha
Helix 6
6
A
362 376Right-handed alpha
Helix 7
7
A
384 407Right-handed alpha
Helix 8
8
A
412 419Right-handed alpha
Helix 9
9
A
420 442Right-handed alpha
Helix 10
10
A
447 455Right-handed alpha
Helix 11
11
B
235 245Right-handed alpha
Helix 12
12
B
260 285Right-handed alpha
Helix 13
13
B
293 317Right-handed alpha
Helix 14
14
B
318 320Right-handed 310
Helix 15
15
B
334 341Right-handed alpha
Helix 16
16
B
342 360Right-handed alpha
Helix 17
17
B
362 376Right-handed alpha
Helix 18
18
B
384 407Right-handed alpha
Helix 19
19
B
412 419Right-handed alpha
Helix 20
20
B
420 442Right-handed alpha
Helix 21
21
B
447 455Right-handed alpha
Helix 22
22
C
378 386Right-handed alpha
Helix 23
23
D
378 386Right-handed alpha
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There are 2 sheets in PDB entry 2GPP. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
330 332anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 327first strand
Strand 2
B
330 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il