Analysis of interatomic Contacts of Structural Units in PDB entry:
2GPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GPS entry

There are 2 chains in PDB entry 2GPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4LEU 446
B
 PRO -4LEU 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2GPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
39 45Right-handed alpha
Helix 3
3
A
62 73Right-handed alpha
Helix 4
4
A
88 98Right-handed alpha
Helix 5
5
A
106 113Right-handed alpha
Helix 6
6
A
115 127Right-handed alpha
Helix 7
7
A
141 153Right-handed alpha
Helix 8
8
A
174 176Right-handed 310
Helix 9
9
A
177 194Right-handed alpha
Helix 10
10
A
249 268Right-handed alpha
Helix 11
11
A
296 305Right-handed alpha
Helix 12
12
A
307 317Right-handed alpha
Helix 13
13
A
324 328Right-handed 310
Helix 14
14
A
394 409Right-handed alpha
Helix 15
15
A
417 426Right-handed alpha
Helix 16
16
A
427 433Right-handed alpha
Helix 17
17
A
438 444Right-handed alpha
Helix 18
18
B
10 24Right-handed alpha
Helix 19
19
B
39 45Right-handed alpha
Helix 20
20
B
62 74Right-handed alpha
Helix 21
21
B
83 87Right-handed 310
Helix 22
22
B
88 98Right-handed alpha
Helix 23
23
B
106 115Right-handed alpha
Helix 24
24
B
115 126Right-handed alpha
Helix 25
25
B
141 153Right-handed alpha
Helix 26
26
B
174 176Right-handed 310
Helix 27
27
B
177 193Right-handed alpha
Helix 28
28
B
249 267Right-handed alpha
Helix 29
29
B
296 305Right-handed alpha
Helix 30
30
B
307 318Right-handed alpha
Helix 31
31
B
394 409Right-handed alpha
Helix 32
32
B
417 426Right-handed alpha
Helix 33
33
B
427 433Right-handed alpha
Helix 34
34
B
438 444Right-handed alpha
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There are 12 sheets in PDB entry 2GPS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
27 32parallel
Strand 3
A
4 7parallel
Strand 4
A
77 79parallel
Strand 5
A
101 102parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
198 202anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
208 217anti-parallel
Strand 3
A
228 229anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
208 217anti-parallel
Strand 3
A
270 279anti-parallel
Strand 4
A
284 290anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
384 392anti-parallel
Strand 4
A
365 369anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
410 412anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
27 33parallel
Strand 3
B
4 7parallel
Strand 4
B
77 79parallel
Strand 5
B
101 102parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
198 202anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 290first strand
Strand 2
B
270 280anti-parallel
Strand 3
B
208 217anti-parallel
Strand 4
B
222 233anti-parallel
Strand 5
B
238 243anti-parallel
Strand 6
B
333 340anti-parallel
Strand 7
B
384 392anti-parallel
Strand 8
B
365 369anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
376 377anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
410 412anti-parallel
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