Analysis of interatomic Contacts of Structural Units in PDB entry:
2GPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GPY entry

There are 2 chains in PDB entry 2GPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ARG 214
B
 LEU 8HIS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2GPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
20 33Right-handed alpha
Helix 3
3
A
39 54Right-handed alpha
Helix 4
4
A
66 76Right-handed alpha
Helix 5
5
A
87 101Right-handed alpha
Helix 6
6
A
113 116Right-handed 310
Helix 7
7
A
117 122Right-handed alpha
Helix 8
8
A
135 137Right-handed 310
Helix 9
9
A
138 147Right-handed alpha
Helix 10
10
B
8 14Right-handed alpha
Helix 11
11
B
20 33Right-handed alpha
Helix 12
12
B
39 54Right-handed alpha
Helix 13
13
B
66 76Right-handed alpha
Helix 14
14
B
87 101Right-handed alpha
Helix 15
15
B
113 116Right-handed 310
Helix 16
16
B
117 123Right-handed alpha
Helix 17
17
B
138 147Right-handed alpha
Helix 18
18
B
188 194Right-handed alpha
Helix 19
19
B
227 231Right-handed 310
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There are 2 sheets in PDB entry 2GPY. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
80 84parallel
Strand 3
A
57 61parallel
Strand 4
A
127 133parallel
Strand 5
A
150 159parallel
Strand 6
A
208 213anti-parallel
Strand 7
A
197 202anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
80 85parallel
Strand 3
B
57 61parallel
Strand 4
B
127 133parallel
Strand 5
B
150 159parallel
Strand 6
B
208 213anti-parallel
Strand 7
B
197 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il