Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQ0 entry

There are 2 chains in PDB entry 2GQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 230LYS 485
B
 GLN 231ALA 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2GQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
232 236Right-handed 310
Helix 2
2
A
237 241Right-handed 310
Helix 3
3
A
242 255Right-handed alpha
Helix 4
4
A
311 314Right-handed 310
Helix 5
5
A
315 319Right-handed 310
Helix 6
6
A
335 342Right-handed alpha
Helix 7
7
A
342 367Right-handed alpha
Helix 8
8
A
367 383Right-handed alpha
Helix 9
9
A
384 389Right-handed alpha
Helix 10
10
A
392 398Right-handed alpha
Helix 11
11
A
415 422Right-handed alpha
Helix 12
12
A
437 443Right-handed alpha
Helix 13
13
A
444 446Right-handed 310
Helix 14
14
A
447 454Right-handed alpha
Helix 15
15
A
464 469Right-handed alpha
Helix 16
16
B
232 236Right-handed 310
Helix 17
17
B
242 255Right-handed alpha
Helix 18
18
B
311 314Right-handed 310
Helix 19
19
B
315 319Right-handed 310
Helix 20
20
B
335 341Right-handed alpha
Helix 21
21
B
342 367Right-handed alpha
Helix 22
22
B
367 383Right-handed alpha
Helix 23
23
B
384 389Right-handed alpha
Helix 24
24
B
392 400Right-handed alpha
Helix 25
25
B
415 422Right-handed alpha
Helix 26
26
B
437 444Right-handed alpha
Helix 27
27
B
447 454Right-handed alpha
Helix 28
28
B
462 469Right-handed alpha
Helix 29
29
B
487 494Right-handed alpha
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There are 4 sheets in PDB entry 2GQ0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 268first strand
Strand 2
A
274 280anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
297 301parallel
Strand 5
A
304 310anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
457 460anti-parallel
Strand 3
A
430 434parallel
Strand 4
A
478 482parallel
Strand 5
A
474 475anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 268first strand
Strand 2
B
274 280anti-parallel
Strand 3
B
322 327anti-parallel
Strand 4
B
297 301parallel
Strand 5
B
304 310anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 404first strand
Strand 2
B
457 460anti-parallel
Strand 3
B
430 434parallel
Strand 4
B
478 482parallel
Strand 5
B
474 475anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il