Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQF entry

There is 1 chain in PDB entry 2GQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLN 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2GQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
40 46Right-handed alpha
Helix 3
3
A
47 50Right-handed 310
Helix 4
4
A
59 61Right-handed 310
Helix 5
5
A
71 78Right-handed alpha
Helix 6
6
A
79 90Right-handed alpha
Helix 7
7
A
108 123Right-handed alpha
Helix 8
8
A
169 173Right-handed 310
Helix 9
9
A
176 185Right-handed alpha
Helix 10
10
A
202 212Right-handed 310
Helix 11
11
A
241 248Right-handed alpha
Helix 12
12
A
266 278Right-handed alpha
Helix 13
13
A
282 288Right-handed alpha
Helix 14
14
A
292 302Right-handed alpha
Helix 15
15
A
309 313Right-handed 310
Helix 16
16
A
314 327Right-handed alpha
Helix 17
17
A
350 353Right-handed 310
Helix 18
18
A
370 373Right-handed 310
Helix 19
19
A
381 400Right-handed alpha
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There are 6 sheets in PDB entry 2GQF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
153 157parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
132 137anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
30 33parallel
Strand 3
A
7 10parallel
Strand 4
A
159 162parallel
Strand 5
A
366 368parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
94 96anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 195first strand
Strand 2
A
343 348anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
227 234anti-parallel
Strand 5
A
238 240anti-parallel
Strand 6
A
199 200anti-parallel
Strand 7
A
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il