Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQK entry

There is 1 chain in PDB entry 2GQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 129SER 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2GQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
152 156Right-handed alpha
Helix 2
2
A
171 190Right-handed alpha
Helix 3
3
A
209 221Right-handed alpha
Helix 4
4
A
230 241Right-handed alpha
Helix 5
5
A
282 294Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2GQK.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
225 228anti-parallel
Strand 4
A
196 201parallel
Strand 5
A
159 164parallel
Strand 6
A
263 267anti-parallel
Strand 7
A
275 278anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il