Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQP entry

There are 2 chains in PDB entry 2GQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 65ASN 337
B
 GLY 65ASN 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2GQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 72Right-handed alpha
Helix 2
2
A
79 93Right-handed alpha
Helix 3
3
A
98 122Right-handed alpha
Helix 4
4
A
155 165Right-handed alpha
Helix 5
5
A
188 195Right-handed alpha
Helix 6
6
A
197 204Right-handed 310
Helix 7
7
A
253 259Right-handed 310
Helix 8
8
A
260 273Right-handed alpha
Helix 9
9
B
66 71Right-handed alpha
Helix 10
10
B
79 93Right-handed alpha
Helix 11
11
B
98 122Right-handed alpha
Helix 12
12
B
155 165Right-handed alpha
Helix 13
13
B
188 196Right-handed alpha
Helix 14
14
B
197 204Right-handed 310
Helix 15
15
B
253 259Right-handed 310
Helix 16
16
B
260 272Right-handed alpha
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There are 2 sheets in PDB entry 2GQP. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
206 214anti-parallel
Strand 5
A
244 251anti-parallel
Strand 6
A
144 149anti-parallel
Strand 7
A
134 139anti-parallel
Strand 8
A
279 284parallel
Strand 9
A
331 335anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
230 234anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
206 214anti-parallel
Strand 5
B
244 251anti-parallel
Strand 6
B
144 149anti-parallel
Strand 7
B
134 139anti-parallel
Strand 8
B
279 284parallel
Strand 9
B
331 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il