Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQQ entry

There are 4 chains in PDB entry 2GQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12ARG 164
B
 LEU 12LYS 162
C
 PRO 8ARG 164
D
 LEU 12ARG 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2GQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
88 98Right-handed alpha
Helix 5
5
A
123 131Right-handed alpha
Helix 6
6
B
15 26Right-handed alpha
Helix 7
7
B
30 38Right-handed alpha
Helix 8
8
B
47 56Right-handed alpha
Helix 9
9
B
88 98Right-handed alpha
Helix 10
10
B
123 131Right-handed alpha
Helix 11
11
B
134 138Right-handed 310
Helix 12
12
C
13 26Right-handed alpha
Helix 13
13
C
30 39Right-handed alpha
Helix 14
14
C
41 56Right-handed alpha
Helix 15
15
C
88 95Right-handed alpha
Helix 16
16
C
123 134Right-handed alpha
Helix 17
17
D
13 26Right-handed alpha
Helix 18
18
D
30 39Right-handed alpha
Helix 19
19
D
41 47Right-handed alpha
Helix 20
20
D
47 55Right-handed alpha
Helix 21
21
D
88 95Right-handed alpha
Helix 22
22
D
123 134Right-handed alpha
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There are 4 sheets in PDB entry 2GQQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 65first strand
Strand 2
B
58 65anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
B
141 154anti-parallel
Strand 5
B
74 82anti-parallel
Strand 6
B
115 121anti-parallel
Strand 7
B
103 109anti-parallel
Strand 8
A
143 155anti-parallel
Strand 9
A
75 81anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 65first strand
Strand 2
D
58 65anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 81first strand
Strand 2
C
115 121anti-parallel
Strand 3
C
103 109anti-parallel
Strand 4
D
141 155anti-parallel
Strand 5
D
74 82anti-parallel
Strand 6
D
115 121anti-parallel
Strand 7
D
103 109anti-parallel
Strand 8
C
143 155anti-parallel
Strand 9
C
74 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il