Analysis of interatomic Contacts of Structural Units in PDB entry:
2GRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GRJ entry

There are 8 chains in PDB entry 2GRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -2	TRP 176
B	HIS -2	TRP 176
C	HIS -2	TRP 176
D	HIS -2	TRP 176
E	HIS -2	TRP 176
F	HIS -2	TRP 176
G	HIS -2	TRP 176
H	HIS -2	TRP 176

There are 81 helices in PDB entry 2GRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	25	Right-handed alpha
Helix 2	2	A	31	42	Right-handed alpha
Helix 3	3	A	42	51	Right-handed alpha
Helix 4	4	A	52	55	Right-handed 310
Helix 5	5	A	61	70	Right-handed alpha
Helix 6	6	A	72	97	Right-handed alpha
Helix 7	7	A	113	118	Right-handed 310
Helix 8	8	A	127	135	Right-handed alpha
Helix 9	9	A	137	143	Right-handed alpha
Helix 10	10	A	160	176	Right-handed alpha
Helix 11	11	B	12	25	Right-handed alpha
Helix 12	12	B	31	42	Right-handed alpha
Helix 13	13	B	42	51	Right-handed alpha
Helix 14	14	B	52	55	Right-handed 310
Helix 15	15	B	61	70	Right-handed alpha
Helix 16	16	B	72	97	Right-handed alpha
Helix 17	17	B	114	118	Right-handed 310
Helix 18	18	B	127	135	Right-handed alpha
Helix 19	19	B	137	143	Right-handed alpha
Helix 20	20	B	160	176	Right-handed alpha
Helix 21	21	C	12	25	Right-handed alpha
Helix 22	22	C	31	42	Right-handed alpha
Helix 23	23	C	42	51	Right-handed alpha
Helix 24	24	C	52	55	Right-handed 310
Helix 25	25	C	61	70	Right-handed alpha
Helix 26	26	C	72	97	Right-handed alpha
Helix 27	27	C	113	118	Right-handed 310
Helix 28	28	C	127	135	Right-handed alpha
Helix 29	29	C	137	142	Right-handed alpha
Helix 30	30	C	143	145	Right-handed 310
Helix 31	31	C	160	176	Right-handed alpha
Helix 32	32	D	12	25	Right-handed alpha
Helix 33	33	D	31	42	Right-handed alpha
Helix 34	34	D	42	51	Right-handed alpha
Helix 35	35	D	52	55	Right-handed 310
Helix 36	36	D	61	70	Right-handed alpha
Helix 37	37	D	72	97	Right-handed alpha
Helix 38	38	D	113	118	Right-handed 310
Helix 39	39	D	127	135	Right-handed alpha
Helix 40	40	D	137	143	Right-handed alpha
Helix 41	41	D	160	176	Right-handed alpha
Helix 42	42	E	12	25	Right-handed alpha
Helix 43	43	E	31	42	Right-handed alpha
Helix 44	44	E	42	51	Right-handed alpha
Helix 45	45	E	52	55	Right-handed 310
Helix 46	46	E	61	70	Right-handed alpha
Helix 47	47	E	72	97	Right-handed alpha
Helix 48	48	E	114	118	Right-handed 310
Helix 49	49	E	127	135	Right-handed alpha
Helix 50	50	E	137	143	Right-handed alpha
Helix 51	51	E	160	176	Right-handed alpha
Helix 52	52	F	12	25	Right-handed alpha
Helix 53	53	F	31	42	Right-handed alpha
Helix 54	54	F	42	51	Right-handed alpha
Helix 55	55	F	52	55	Right-handed 310
Helix 56	56	F	61	70	Right-handed alpha
Helix 57	57	F	72	97	Right-handed alpha
Helix 58	58	F	113	118	Right-handed 310
Helix 59	59	F	127	135	Right-handed alpha
Helix 60	60	F	137	143	Right-handed alpha
Helix 61	61	F	160	176	Right-handed alpha
Helix 62	62	G	12	25	Right-handed alpha
Helix 63	63	G	31	42	Right-handed alpha
Helix 64	64	G	42	51	Right-handed alpha
Helix 65	65	G	52	55	Right-handed 310
Helix 66	66	G	61	70	Right-handed alpha
Helix 67	67	G	72	97	Right-handed alpha
Helix 68	68	G	113	118	Right-handed 310
Helix 69	69	G	127	135	Right-handed alpha
Helix 70	70	G	137	143	Right-handed alpha
Helix 71	71	G	160	176	Right-handed alpha
Helix 72	72	H	12	25	Right-handed alpha
Helix 73	73	H	31	42	Right-handed alpha
Helix 74	74	H	42	51	Right-handed alpha
Helix 75	75	H	52	55	Right-handed 310
Helix 76	76	H	61	70	Right-handed alpha
Helix 77	77	H	72	97	Right-handed alpha
Helix 78	78	H	113	118	Right-handed 310
Helix 79	79	H	127	135	Right-handed alpha
Helix 80	80	H	137	143	Right-handed alpha
Helix 81	81	H	160	176	Right-handed alpha

There are 8 sheets in PDB entry 2GRJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	100	105	parallel
Strand 3	A	0	6	parallel
Strand 4	A	120	125	parallel
Strand 5	A	153	156	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	100	105	parallel
Strand 3	B	0	6	parallel
Strand 4	B	120	125	parallel
Strand 5	B	153	156	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	100	105	parallel
Strand 3	C	0	6	parallel
Strand 4	C	120	125	parallel
Strand 5	C	153	156	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	100	105	parallel
Strand 3	D	0	6	parallel
Strand 4	D	120	125	parallel
Strand 5	D	153	156	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	100	105	parallel
Strand 3	E	0	6	parallel
Strand 4	E	120	125	parallel
Strand 5	E	153	156	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	100	105	parallel
Strand 3	F	0	6	parallel
Strand 4	F	120	125	parallel
Strand 5	F	153	156	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	30	first strand
Strand 2	G	100	105	parallel
Strand 3	G	0	6	parallel
Strand 4	G	120	125	parallel
Strand 5	G	153	156	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	30	first strand
Strand 2	H	100	105	parallel
Strand 3	H	0	6	parallel
Strand 4	H	120	125	parallel
Strand 5	H	153	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GRJ