Analysis of interatomic Contacts of Structural Units in PDB entry:
2GRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GRV entry

There are 3 chains in PDB entry 2GRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25THR 599
B
 ALA 25THR 599
C
 ALA 25THR 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2GRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 48Right-handed 310
Helix 2
2
A
49 60Right-handed alpha
Helix 3
3
A
115 129Right-handed alpha
Helix 4
4
A
137 139Right-handed 310
Helix 5
5
A
163 167Right-handed 310
Helix 6
6
A
173 178Right-handed alpha
Helix 7
7
A
182 187Right-handed alpha
Helix 8
8
A
236 246Right-handed alpha
Helix 9
9
A
257 266Right-handed alpha
Helix 10
10
A
289 293Right-handed 310
Helix 11
11
A
294 304Right-handed alpha
Helix 12
12
A
306 316Right-handed alpha
Helix 13
13
A
345 356Right-handed alpha
Helix 14
14
A
399 416Right-handed alpha
Helix 15
15
A
426 433Right-handed alpha
Helix 16
16
A
452 462Right-handed alpha
Helix 17
17
A
526 528Right-handed 310
Helix 18
18
A
529 538Right-handed alpha
Helix 19
19
A
542 557Right-handed alpha
Helix 20
20
A
592 596Right-handed 310
Helix 21
21
B
44 48Right-handed 310
Helix 22
22
B
49 60Right-handed alpha
Helix 23
23
B
115 129Right-handed alpha
Helix 24
24
B
137 139Right-handed 310
Helix 25
25
B
163 167Right-handed 310
Helix 26
26
B
173 178Right-handed alpha
Helix 27
27
B
182 187Right-handed alpha
Helix 28
28
B
236 246Right-handed alpha
Helix 29
29
B
257 266Right-handed alpha
Helix 30
30
B
289 293Right-handed 310
Helix 31
31
B
294 304Right-handed alpha
Helix 32
32
B
306 316Right-handed alpha
Helix 33
33
B
345 357Right-handed alpha
Helix 34
34
B
399 415Right-handed alpha
Helix 35
35
B
426 432Right-handed alpha
Helix 36
36
B
432 437Right-handed alpha
Helix 37
37
B
452 462Right-handed alpha
Helix 38
38
B
529 538Right-handed alpha
Helix 39
39
B
542 557Right-handed alpha
Helix 40
40
B
589 596Right-handed 310
Helix 41
41
C
44 48Right-handed 310
Helix 42
42
C
49 60Right-handed alpha
Helix 43
43
C
115 129Right-handed alpha
Helix 44
44
C
137 139Right-handed 310
Helix 45
45
C
163 167Right-handed 310
Helix 46
46
C
173 178Right-handed alpha
Helix 47
47
C
182 187Right-handed alpha
Helix 48
48
C
236 246Right-handed alpha
Helix 49
49
C
257 266Right-handed alpha
Helix 50
50
C
289 293Right-handed 310
Helix 51
51
C
294 305Right-handed alpha
Helix 52
52
C
306 316Right-handed alpha
Helix 53
53
C
345 356Right-handed alpha
Helix 54
54
C
399 416Right-handed alpha
Helix 55
55
C
426 433Right-handed alpha
Helix 56
56
C
452 462Right-handed alpha
Helix 57
57
C
526 528Right-handed 310
Helix 58
58
C
529 538Right-handed alpha
Helix 59
59
C
542 557Right-handed alpha
Helix 60
60
C
592 596Right-handed 310
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There are 17 sheets in PDB entry 2GRV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
251 254parallel
Strand 6
A
560 572anti-parallel
Strand 7
A
322 323anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
251 254parallel
Strand 6
A
560 572anti-parallel
Strand 7
A
271 285anti-parallel
Strand 8
A
442 448anti-parallel
Strand 9
A
390 396parallel
Strand 10
A
419 425parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
76 80anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 92first strand
Strand 2
A
97 102anti-parallel
Strand 3
A
152 157anti-parallel
Strand 4
A
141 147anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
381 384anti-parallel
Strand 3
A
387 388anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 577first strand
Strand 2
A
597 598anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 205first strand
Strand 2
B
210 215anti-parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
28 33parallel
Strand 5
B
251 254parallel
Strand 6
B
560 572anti-parallel
Strand 7
B
271 285anti-parallel
Strand 8
B
442 448anti-parallel
Strand 9
B
390 396parallel
Strand 10
B
419 425parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
76 80anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 92first strand
Strand 2
B
97 102anti-parallel
Strand 3
B
152 157anti-parallel
Strand 4
B
141 147anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
381 384anti-parallel
Strand 3
B
387 388anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 577first strand
Strand 2
B
597 598anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 205first strand
Strand 2
C
210 215anti-parallel
Strand 3
C
228 233anti-parallel
Strand 4
C
28 33parallel
Strand 5
C
251 254parallel
Strand 6
C
560 572anti-parallel
Strand 7
C
322 323anti-parallel
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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 205first strand
Strand 2
C
210 215anti-parallel
Strand 3
C
228 233anti-parallel
Strand 4
C
28 33parallel
Strand 5
C
251 254parallel
Strand 6
C
560 572anti-parallel
Strand 7
C
271 285anti-parallel
Strand 8
C
442 448anti-parallel
Strand 9
C
390 396parallel
Strand 10
C
419 425parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
76 80anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 92first strand
Strand 2
C
97 102anti-parallel
Strand 3
C
152 157anti-parallel
Strand 4
C
141 147anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
359 361first strand
Strand 2
C
381 384anti-parallel
Strand 3
C
387 388anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
576 577first strand
Strand 2
C
597 598anti-parallel
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