Analysis of interatomic Contacts of Structural Units in PDB entry:
2GS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GS8 entry

There is 1 chain in PDB entry 2GS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1VAL 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2GS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 80Right-handed alpha
Helix 2
2
A
99 103Right-handed 310
Helix 3
3
A
105 122Right-handed alpha
Helix 4
4
A
127 140Right-handed alpha
Helix 5
5
A
141 147Right-handed 310
Helix 6
6
A
184 196Right-handed alpha
Helix 7
7
A
198 219Right-handed alpha
Helix 8
8
A
221 241Right-handed alpha
Helix 9
9
A
251 267Right-handed alpha
Helix 10
10
A
289 299Right-handed alpha
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There are 4 sheets in PDB entry 2GS8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 17first strand
Strand 2
A
34 50anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
59 62parallel
Strand 5
A
65 66anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 17first strand
Strand 2
A
34 50anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
160 162anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
29 30anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
281 286anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
302 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il