Analysis of interatomic Contacts of Structural Units in PDB entry:
2GSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GSK entry

There are 2 chains in PDB entry 2GSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5PHE 594
B
 PRO 153ASN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2GSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 38Right-handed alpha
Helix 2
2
A
41 47Right-handed alpha
Helix 3
3
A
72 74Right-handed 310
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
100 104Right-handed 310
Helix 6
6
A
114 119Right-handed 310
Helix 7
7
A
325 329Right-handed 310
Helix 8
8
A
397 403Right-handed alpha
Helix 9
9
B
164 170Right-handed alpha
Helix 10
10
B
202 211Right-handed alpha
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There are 7 sheets in PDB entry 2GSK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
B
221 231parallel
Strand 3
B
174 182anti-parallel
Strand 4
B
188 197anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
125 130anti-parallel
Strand 4
A
76 80parallel
Strand 5
A
83 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
64 68anti-parallel
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There are 24 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
A
475 488anti-parallel
Strand 3
A
501 511anti-parallel
Strand 4
A
514 523anti-parallel
Strand 5
A
544 554anti-parallel
Strand 6
A
559 566anti-parallel
Strand 7
A
585 593anti-parallel
Strand 8
A
137 145anti-parallel
Strand 9
A
149 161anti-parallel
Strand 10
A
164 178anti-parallel
Strand 11
A
195 209anti-parallel
Strand 12
A
214 228anti-parallel
Strand 13
A
242 257anti-parallel
Strand 14
A
261 277anti-parallel
Strand 15
A
289 305anti-parallel
Strand 16
A
309 322anti-parallel
Strand 17
A
333 348anti-parallel
Strand 18
A
351 362anti-parallel
Strand 19
A
366 380anti-parallel
Strand 20
A
383 394anti-parallel
Strand 21
A
413 426anti-parallel
Strand 22
A
429 441anti-parallel
Strand 23
A
459 472anti-parallel
Strand 24
A
475 488anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 447first strand
Strand 2
A
452 455anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 530first strand
Strand 2
A
537 541anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
214 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il