Analysis of interatomic Contacts of Structural Units in PDB entry:
2GTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GTD entry

There are 6 chains in PDB entry 2GTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 248
B
 MET 1GLY 248
C
 MET 1GLY 248
D
 MET 1GLY 248
E
 MET 1GLY 248
F
 MET 1GLY 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2GTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 51Right-handed alpha
Helix 2
2
A
52 55Right-handed 310
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
69 82Right-handed alpha
Helix 5
5
A
101 105Right-handed 310
Helix 6
6
A
106 120Right-handed alpha
Helix 7
7
A
151 162Right-handed alpha
Helix 8
8
A
181 210Right-handed alpha
Helix 9
9
A
221 228Right-handed 310
Helix 10
10
A
236 248Right-handed alpha
Helix 11
11
B
38 51Right-handed alpha
Helix 12
12
B
52 55Right-handed 310
Helix 13
13
B
66 68Right-handed 310
Helix 14
14
B
69 82Right-handed alpha
Helix 15
15
B
101 105Right-handed 310
Helix 16
16
B
106 120Right-handed alpha
Helix 17
17
B
151 162Right-handed alpha
Helix 18
18
B
181 210Right-handed alpha
Helix 19
19
B
221 225Right-handed 310
Helix 20
20
B
236 248Right-handed alpha
Helix 21
21
C
38 51Right-handed alpha
Helix 22
22
C
52 55Right-handed 310
Helix 23
23
C
66 82Right-handed alpha
Helix 24
24
C
101 105Right-handed 310
Helix 25
25
C
106 120Right-handed alpha
Helix 26
26
C
151 162Right-handed alpha
Helix 27
27
C
181 210Right-handed alpha
Helix 28
28
C
224 228Right-handed 310
Helix 29
29
C
236 248Right-handed alpha
Helix 30
30
D
38 51Right-handed alpha
Helix 31
31
D
52 55Right-handed 310
Helix 32
32
D
66 82Right-handed alpha
Helix 33
33
D
101 105Right-handed 310
Helix 34
34
D
106 120Right-handed alpha
Helix 35
35
D
151 162Right-handed alpha
Helix 36
36
D
181 210Right-handed alpha
Helix 37
37
D
221 228Right-handed 310
Helix 38
38
D
236 248Right-handed alpha
Helix 39
39
E
38 51Right-handed alpha
Helix 40
40
E
52 57Right-handed 310
Helix 41
41
E
66 82Right-handed alpha
Helix 42
42
E
101 105Right-handed 310
Helix 43
43
E
106 120Right-handed alpha
Helix 44
44
E
151 162Right-handed alpha
Helix 45
45
E
181 210Right-handed alpha
Helix 46
46
E
221 228Right-handed 310
Helix 47
47
E
236 248Right-handed alpha
Helix 48
48
F
38 51Right-handed alpha
Helix 49
49
F
52 55Right-handed 310
Helix 50
50
F
66 68Right-handed 310
Helix 51
51
F
69 82Right-handed alpha
Helix 52
52
F
101 105Right-handed 310
Helix 53
53
F
106 120Right-handed alpha
Helix 54
54
F
151 162Right-handed alpha
Helix 55
55
F
181 210Right-handed alpha
Helix 56
56
F
221 228Right-handed 310
Helix 57
57
F
236 248Right-handed alpha
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There are 12 sheets in PDB entry 2GTD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
57 64parallel
Strand 5
A
86 87parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
142 150parallel
Strand 3
A
132 139anti-parallel
Strand 4
A
124 129anti-parallel
Strand 5
A
214 217parallel
Strand 6
A
232 233parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
57 64parallel
Strand 5
B
86 87parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
142 150parallel
Strand 3
B
132 139anti-parallel
Strand 4
B
124 129anti-parallel
Strand 5
B
214 217parallel
Strand 6
B
232 233parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 32first strand
Strand 2
C
14 20anti-parallel
Strand 3
C
4 10anti-parallel
Strand 4
C
57 64parallel
Strand 5
C
86 87parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 97first strand
Strand 2
C
142 150parallel
Strand 3
C
132 139anti-parallel
Strand 4
C
124 129anti-parallel
Strand 5
C
214 217parallel
Strand 6
C
232 233parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 32first strand
Strand 2
D
14 20anti-parallel
Strand 3
D
4 10anti-parallel
Strand 4
D
57 64parallel
Strand 5
D
86 87parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 97first strand
Strand 2
D
142 150parallel
Strand 3
D
132 139anti-parallel
Strand 4
D
124 129anti-parallel
Strand 5
D
214 217parallel
Strand 6
D
232 233parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 32first strand
Strand 2
E
14 20anti-parallel
Strand 3
E
5 10anti-parallel
Strand 4
E
59 64parallel
Strand 5
E
86 87parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
96 97first strand
Strand 2
E
142 150parallel
Strand 3
E
132 139anti-parallel
Strand 4
E
124 129anti-parallel
Strand 5
E
214 217parallel
Strand 6
E
232 233parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 32first strand
Strand 2
F
14 20anti-parallel
Strand 3
F
4 10anti-parallel
Strand 4
F
57 64parallel
Strand 5
F
86 87parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
96 97first strand
Strand 2
F
142 150parallel
Strand 3
F
132 139anti-parallel
Strand 4
F
124 129anti-parallel
Strand 5
F
214 217parallel
Strand 6
F
232 233parallel
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