Analysis of interatomic Contacts of Structural Units in PDB entry:
2GTL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GTL entry

There are 15 chains in PDB entry 2GTL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	PRO 151
B	LYS 1	HIS 145
C	HIS 3	LEU 151
D	GLU 8	LYS 147
E	ASP 5	PRO 151
F	LYS 1	HIS 145
G	HIS 3	LEU 151
H	GLU 8	LYS 147
I	ASP 5	PRO 151
J	LYS 1	HIS 145
K	HIS 3	LEU 151
L	GLU 8	LYS 147
M	ARG 9	TYR 225
N	LEU 10	ASP 229
O	GLN 8	LYS 222

There are102 helices in PDB entry 2GTL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	23	Right-handed alpha
Helix 2	2	A	27	46	Right-handed alpha
Helix 3	3	A	47	57	Right-handed 310
Helix 4	4	A	64	82	Right-handed alpha
Helix 5	5	A	86	103	Right-handed alpha
Helix 6	6	A	108	127	Right-handed alpha
Helix 7	7	A	131	147	Right-handed alpha
Helix 8	8	B	6	21	Right-handed alpha
Helix 9	9	B	22	41	Right-handed alpha
Helix 10	10	B	42	52	Right-handed 310
Helix 11	11	B	58	77	Right-handed alpha
Helix 12	12	B	81	97	Right-handed alpha
Helix 13	13	B	102	122	Right-handed alpha
Helix 14	14	B	126	143	Right-handed alpha
Helix 15	15	C	8	21	Right-handed alpha
Helix 16	16	C	22	25	Right-handed 310
Helix 17	17	C	27	47	Right-handed alpha
Helix 18	18	C	48	51	Right-handed 310
Helix 19	19	C	53	58	Right-handed 310
Helix 20	20	C	64	84	Right-handed alpha
Helix 21	21	C	87	104	Right-handed alpha
Helix 22	22	C	109	128	Right-handed alpha
Helix 23	23	C	132	149	Right-handed alpha
Helix 24	24	D	11	26	Right-handed alpha
Helix 25	25	D	28	46	Right-handed alpha
Helix 26	26	D	47	55	Right-handed 310
Helix 27	27	D	63	82	Right-handed alpha
Helix 28	28	D	86	103	Right-handed alpha
Helix 29	29	D	108	127	Right-handed alpha
Helix 30	30	D	131	145	Right-handed alpha
Helix 31	31	E	8	23	Right-handed alpha
Helix 32	32	E	27	46	Right-handed alpha
Helix 33	33	E	47	57	Right-handed 310
Helix 34	34	E	64	82	Right-handed alpha
Helix 35	35	E	86	103	Right-handed alpha
Helix 36	36	E	108	127	Right-handed alpha
Helix 37	37	E	131	147	Right-handed alpha
Helix 38	38	F	6	21	Right-handed alpha
Helix 39	39	F	22	41	Right-handed alpha
Helix 40	40	F	42	52	Right-handed 310
Helix 41	41	F	58	77	Right-handed alpha
Helix 42	42	F	81	97	Right-handed alpha
Helix 43	43	F	102	122	Right-handed alpha
Helix 44	44	F	126	143	Right-handed alpha
Helix 45	45	G	8	21	Right-handed alpha
Helix 46	46	G	22	25	Right-handed 310
Helix 47	47	G	27	47	Right-handed alpha
Helix 48	48	G	48	51	Right-handed 310
Helix 49	49	G	53	58	Right-handed 310
Helix 50	50	G	64	84	Right-handed alpha
Helix 51	51	G	87	104	Right-handed alpha
Helix 52	52	G	109	128	Right-handed alpha
Helix 53	53	G	132	149	Right-handed alpha
Helix 54	54	H	11	26	Right-handed alpha
Helix 55	55	H	28	46	Right-handed alpha
Helix 56	56	H	47	55	Right-handed 310
Helix 57	57	H	63	82	Right-handed alpha
Helix 58	58	H	86	103	Right-handed alpha
Helix 59	59	H	108	127	Right-handed alpha
Helix 60	60	H	131	145	Right-handed alpha
Helix 61	61	I	8	23	Right-handed alpha
Helix 62	62	I	27	46	Right-handed alpha
Helix 63	63	I	47	57	Right-handed 310
Helix 64	64	I	64	82	Right-handed alpha
Helix 65	65	I	86	103	Right-handed alpha
Helix 66	66	I	108	127	Right-handed alpha
Helix 67	67	I	131	147	Right-handed alpha
Helix 68	68	J	6	21	Right-handed alpha
Helix 69	69	J	22	41	Right-handed alpha
Helix 70	70	J	42	52	Right-handed 310
Helix 71	71	J	58	77	Right-handed alpha
Helix 72	72	J	81	97	Right-handed alpha
Helix 73	73	J	102	122	Right-handed alpha
Helix 74	74	J	126	143	Right-handed alpha
Helix 75	75	K	8	21	Right-handed alpha
Helix 76	76	K	22	25	Right-handed 310
Helix 77	77	K	27	47	Right-handed alpha
Helix 78	78	K	48	51	Right-handed 310
Helix 79	79	K	53	58	Right-handed 310
Helix 80	80	K	64	84	Right-handed alpha
Helix 81	81	K	87	104	Right-handed alpha
Helix 82	82	K	109	128	Right-handed alpha
Helix 83	83	K	132	149	Right-handed alpha
Helix 84	84	L	11	26	Right-handed alpha
Helix 85	85	L	28	46	Right-handed alpha
Helix 86	86	L	47	55	Right-handed 310
Helix 87	87	L	63	82	Right-handed alpha
Helix 88	88	L	86	103	Right-handed alpha
Helix 89	89	L	108	127	Right-handed alpha
Helix 90	90	L	131	145	Right-handed alpha
Helix 91	91	M	13	37	Right-handed alpha
Helix 92	92	M	43	56	Right-handed alpha
Helix 93	93	M	80	82	Right-handed 310
Helix 94	94	M	96	101	Right-handed alpha
Helix 95	95	M	102	106	Right-handed 310
Helix 96	96	N	10	41	Right-handed alpha
Helix 97	97	N	42	59	Right-handed alpha
Helix 98	98	N	96	106	Right-handed 310
Helix 99	99	O	18	40	Right-handed alpha
Helix 100	100	O	40	58	Right-handed alpha
Helix 101	101	O	80	82	Right-handed 310
Helix 102	102	O	92	97	Right-handed alpha

There are 7 sheets in PDB entry 2GTL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	66	68	first strand
Strand 2	M	76	78	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	110	117	first strand
Strand 2	M	126	135	anti-parallel
Strand 3	M	147	154	anti-parallel
Strand 4	M	162	172	anti-parallel
Strand 5	M	177	182	anti-parallel
Strand 6	M	192	195	anti-parallel
Strand 7	M	203	210	anti-parallel
Strand 8	M	215	224	anti-parallel
Strand 9	M	110	117	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	68	first strand
Strand 2	N	76	78	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	110	117	first strand
Strand 2	N	126	136	anti-parallel
Strand 3	N	145	152	anti-parallel
Strand 4	N	166	173	anti-parallel
Strand 5	N	178	183	anti-parallel
Strand 6	N	192	196	anti-parallel
Strand 7	N	204	210	anti-parallel
Strand 8	N	217	225	anti-parallel
Strand 9	N	110	117	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	154	156	first strand
Strand 2	N	161	163	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	66	68	first strand
Strand 2	O	76	78	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	107	115	first strand
Strand 2	O	124	134	anti-parallel
Strand 3	O	141	151	anti-parallel
Strand 4	O	160	170	anti-parallel
Strand 5	O	175	178	anti-parallel
Strand 6	O	186	192	anti-parallel
Strand 7	O	199	206	anti-parallel
Strand 8	O	211	220	anti-parallel
Strand 9	O	107	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GTL

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GTL