Analysis of interatomic Contacts of Structural Units in PDB entry:
2GTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GTP entry

There are 4 chains in PDB entry 2GTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 32LEU 348
B
ARG 32LEU 348
C
VAL 60GLN 191
D
VAL 60GLN 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2GTP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
62 68Right-handed alpha
Helix 3
3
A
69 92Right-handed alpha
Helix 4
4
A
99 111Right-handed alpha
Helix 5
5
A
120 133Right-handed alpha
Helix 6
6
A
133 142Right-handed alpha
Helix 7
7
A
143 146Right-handed 310
Helix 8
8
A
151 158Right-handed alpha
Helix 9
9
A
158 163Right-handed alpha
Helix 10
10
A
170 176Right-handed alpha
Helix 11
11
A
204 209Right-handed alpha
Helix 12
12
A
210 215Right-handed 310
Helix 13
13
A
228 231Right-handed 310
Helix 14
14
A
242 255Right-handed alpha
Helix 15
15
A
256 260Right-handed 310
Helix 16
16
A
270 278Right-handed alpha
Helix 17
17
A
282 286Right-handed 310
Helix 18
18
A
295 309Right-handed alpha
Helix 19
19
A
328 347Right-handed alpha
Helix 20
20
B
45 58Right-handed alpha
Helix 21
21
B
62 68Right-handed alpha
Helix 22
22
B
69 91Right-handed alpha
Helix 23
23
B
99 112Right-handed alpha
Helix 24
24
B
120 133Right-handed alpha
Helix 25
25
B
133 142Right-handed alpha
Helix 26
26
B
143 146Right-handed 310
Helix 27
27
B
151 158Right-handed alpha
Helix 28
28
B
158 163Right-handed alpha
Helix 29
29
B
170 176Right-handed alpha
Helix 30
30
B
204 209Right-handed alpha
Helix 31
31
B
210 215Right-handed 310
Helix 32
32
B
228 232Right-handed 310
Helix 33
33
B
241 255Right-handed alpha
Helix 34
34
B
256 260Right-handed 310
Helix 35
35
B
270 278Right-handed alpha
Helix 36
36
B
282 286Right-handed 310
Helix 37
37
B
295 309Right-handed alpha
Helix 38
38
B
328 347Right-handed alpha
Helix 39
39
C
62 69Right-handed alpha
Helix 40
40
C
72 79Right-handed alpha
Helix 41
41
C
79 93Right-handed alpha
Helix 42
42
C
96 111Right-handed alpha
Helix 43
43
C
112 114Right-handed 310
Helix 44
44
C
115 128Right-handed alpha
Helix 45
45
C
139 151Right-handed alpha
Helix 46
46
C
158 172Right-handed alpha
Helix 47
47
C
172 178Right-handed alpha
Helix 48
48
C
180 190Right-handed alpha
Helix 49
49
D
63 68Right-handed alpha
Helix 50
50
D
69 71Right-handed 310
Helix 51
51
D
72 79Right-handed alpha
Helix 52
52
D
79 93Right-handed alpha
Helix 53
53
D
96 111Right-handed alpha
Helix 54
54
D
112 114Right-handed 310
Helix 55
55
D
115 128Right-handed alpha
Helix 56
56
D
139 150Right-handed alpha
Helix 57
57
D
158 172Right-handed alpha
Helix 58
58
D
172 178Right-handed alpha
Helix 59
59
D
180 190Right-handed alpha
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There are 3 sheets in PDB entry 2GTP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
184 191first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
33 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
319 323parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 241anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
184 191first strand
Strand 2
B
194 201anti-parallel
Strand 3
B
33 40parallel
Strand 4
B
220 226parallel
Strand 5
B
263 269parallel
Strand 6
B
319 323parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il