Analysis of interatomic Contacts of Structural Units in PDB entry:
2GUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GUP entry

There is 1 chain in PDB entry 2GUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1TRP 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2GUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 48Right-handed alpha
Helix 2
2
A
76 80Right-handed 310
Helix 3
3
A
83 88Right-handed alpha
Helix 4
4
A
89 92Right-handed 310
Helix 5
5
A
100 112Right-handed alpha
Helix 6
6
A
147 151Right-handed 310
Helix 7
7
A
162 168Right-handed alpha
Helix 8
8
A
168 181Right-handed alpha
Helix 9
9
A
186 196Right-handed alpha
Helix 10
10
A
198 224Right-handed alpha
Helix 11
11
A
232 236Right-handed 310
Helix 12
12
A
237 255Right-handed alpha
Helix 13
13
A
272 286Right-handed alpha
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There are 3 sheets in PDB entry 2GUP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
54 59parallel
Strand 5
A
95 99parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
70 71anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
127 133anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
227 231parallel
Strand 5
A
264 266parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il