Analysis of interatomic Contacts of Structural Units in PDB entry:
2GV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GV9 entry

There are 2 chains in PDB entry 2GV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	HIS 1197
B	THR 59	HIS 1197

There are 86 helices in PDB entry 2GV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	81	83	Right-handed 310
Helix 2	2	A	159	163	Right-handed 310
Helix 3	3	A	168	175	Right-handed alpha
Helix 4	4	A	209	215	Right-handed alpha
Helix 5	5	A	220	235	Right-handed alpha
Helix 6	6	A	244	248	Right-handed 310
Helix 7	7	A	275	286	Right-handed alpha
Helix 8	8	A	298	307	Right-handed alpha
Helix 9	9	A	331	335	Right-handed 310
Helix 10	10	A	420	430	Right-handed alpha
Helix 11	11	A	442	458	Right-handed alpha
Helix 12	12	A	470	482	Right-handed alpha
Helix 13	13	A	525	530	Right-handed alpha
Helix 14	14	A	539	547	Right-handed alpha
Helix 15	15	A	559	565	Right-handed alpha
Helix 16	16	A	567	593	Right-handed alpha
Helix 17	17	A	593	606	Right-handed alpha
Helix 18	18	A	608	612	Right-handed 310
Helix 19	19	A	618	633	Right-handed alpha
Helix 20	20	A	720	729	Right-handed alpha
Helix 21	21	A	772	792	Right-handed alpha
Helix 22	22	A	793	795	Right-handed 310
Helix 23	23	A	796	815	Right-handed alpha
Helix 24	24	A	816	823	Right-handed alpha
Helix 25	25	A	830	857	Right-handed alpha
Helix 26	26	A	858	866	Right-handed alpha
Helix 27	27	A	867	873	Right-handed 310
Helix 28	28	A	901	918	Right-handed alpha
Helix 29	29	A	963	980	Right-handed alpha
Helix 30	30	A	980	990	Right-handed alpha
Helix 31	31	A	991	993	Right-handed 310
Helix 32	32	A	994	1001	Right-handed alpha
Helix 33	33	A	1004	1006	Right-handed 310
Helix 34	34	A	1007	1023	Right-handed alpha
Helix 35	35	A	1028	1032	Right-handed 310
Helix 36	36	A	1145	1152	Right-handed alpha
Helix 37	37	A	1157	1173	Right-handed alpha
Helix 38	38	A	1174	1178	Right-handed 310
Helix 39	39	A	1180	1190	Right-handed alpha
Helix 40	40	A	1191	1192	Right-handed 310
Helix 41	41	A	1193	1197	Right-handed 310
Helix 42	42	B	81	83	Right-handed 310
Helix 43	43	B	88	92	Right-handed 310
Helix 44	44	B	159	163	Right-handed alpha
Helix 45	45	B	168	174	Right-handed alpha
Helix 46	46	B	209	213	Right-handed alpha
Helix 47	47	B	220	233	Right-handed alpha
Helix 48	48	B	275	284	Right-handed alpha
Helix 49	49	B	298	306	Right-handed alpha
Helix 50	50	B	331	335	Right-handed 310
Helix 51	51	B	420	430	Right-handed alpha
Helix 52	52	B	442	458	Right-handed alpha
Helix 53	53	B	470	481	Right-handed alpha
Helix 54	54	B	525	531	Right-handed alpha
Helix 55	55	B	539	549	Right-handed alpha
Helix 56	56	B	559	565	Right-handed alpha
Helix 57	57	B	567	593	Right-handed alpha
Helix 58	58	B	593	606	Right-handed alpha
Helix 59	59	B	608	614	Right-handed alpha
Helix 60	60	B	616	633	Right-handed alpha
Helix 61	61	B	720	729	Right-handed alpha
Helix 62	62	B	772	792	Right-handed alpha
Helix 63	63	B	793	795	Right-handed 310
Helix 64	64	B	796	815	Right-handed alpha
Helix 65	65	B	816	823	Right-handed alpha
Helix 66	66	B	830	856	Right-handed alpha
Helix 67	67	B	858	866	Right-handed alpha
Helix 68	68	B	868	872	Right-handed 310
Helix 69	69	B	901	918	Right-handed alpha
Helix 70	70	B	963	980	Right-handed alpha
Helix 71	71	B	980	990	Right-handed alpha
Helix 72	72	B	994	1000	Right-handed 310
Helix 73	73	B	1004	1006	Right-handed 310
Helix 74	74	B	1007	1023	Right-handed alpha
Helix 75	75	B	1027	1032	Right-handed 310
Helix 76	76	B	1040	1044	Right-handed 310
Helix 77	77	B	1049	1061	Right-handed alpha
Helix 78	78	B	1080	1086	Right-handed alpha
Helix 79	79	B	1086	1096	Right-handed alpha
Helix 80	80	B	1138	1141	Right-handed 310
Helix 81	81	B	1145	1152	Right-handed alpha
Helix 82	82	B	1157	1174	Right-handed alpha
Helix 83	83	B	1175	1178	Right-handed 310
Helix 84	84	B	1180	1190	Right-handed alpha
Helix 85	85	B	1191	1192	Right-handed 310
Helix 86	86	B	1193	1197	Right-handed 310

There are 22 sheets in PDB entry 2GV9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	94	100	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	133	134	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	193	199	parallel
Strand 4	A	179	187	anti-parallel
Strand 5	A	146	157	anti-parallel
Strand 6	A	314	318	anti-parallel
Strand 7	A	350	352	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	266	273	anti-parallel
Strand 4	A	249	257	anti-parallel
Strand 5	A	634	635	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	406	414	parallel
Strand 3	A	390	400	anti-parallel
Strand 4	A	363	372	anti-parallel
Strand 5	A	461	464	parallel
Strand 6	A	521	524	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	515	517	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	923	937	anti-parallel
Strand 3	A	713	719	anti-parallel
Strand 4	A	889	895	anti-parallel
Strand 5	A	879	885	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	923	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	761	765	anti-parallel
Strand 3	A	752	756	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1075	1076	first strand
Strand 2	A	1143	1144	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	79	first strand
Strand 2	B	94	99	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	110	113	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	133	134	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	341	346	anti-parallel
Strand 3	B	193	199	parallel
Strand 4	B	178	187	anti-parallel
Strand 5	B	146	158	anti-parallel
Strand 6	B	314	318	anti-parallel
Strand 7	B	350	352	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	208	first strand
Strand 2	B	266	273	anti-parallel
Strand 3	B	249	257	anti-parallel
Strand 4	B	634	635	parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	406	414	parallel
Strand 3	B	390	400	anti-parallel
Strand 4	B	363	372	anti-parallel
Strand 5	B	461	464	parallel
Strand 6	B	521	524	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	B	514	515	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	709	first strand
Strand 2	B	924	937	anti-parallel
Strand 3	B	713	718	anti-parallel
Strand 4	B	889	895	anti-parallel
Strand 5	B	879	885	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	709	first strand
Strand 2	B	924	937	anti-parallel
Strand 3	B	940	945	anti-parallel
Strand 4	B	950	953	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	761	764	anti-parallel
Strand 3	B	755	757	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1033	1036	first strand
Strand 2	B	1071	1076	anti-parallel
Strand 3	B	1143	1144	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GV9