Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVC entry

There are 4 chains in PDB entry 2GVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 444
B
 LEU 3GLU 444
D
 LEU 3GLU 444
E
 LEU 3GLU 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 2GVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
113 126Right-handed alpha
Helix 4
4
A
127 130Right-handed 310
Helix 5
5
A
186 194Right-handed alpha
Helix 6
6
A
202 204Right-handed 310
Helix 7
7
A
206 211Right-handed 310
Helix 8
8
A
221 232Right-handed alpha
Helix 9
9
A
296 301Right-handed alpha
Helix 10
10
A
321 323Right-handed 310
Helix 11
11
A
341 358Right-handed alpha
Helix 12
12
A
365 381Right-handed alpha
Helix 13
13
A
383 387Right-handed 310
Helix 14
14
A
393 407Right-handed alpha
Helix 15
15
A
423 432Right-handed alpha
Helix 16
16
A
432 441Right-handed alpha
Helix 17
17
B
15 28Right-handed alpha
Helix 18
18
B
44 48Right-handed 310
Helix 19
19
B
113 126Right-handed alpha
Helix 20
20
B
127 130Right-handed 310
Helix 21
21
B
186 194Right-handed alpha
Helix 22
22
B
202 204Right-handed 310
Helix 23
23
B
206 211Right-handed 310
Helix 24
24
B
221 232Right-handed alpha
Helix 25
25
B
296 301Right-handed alpha
Helix 26
26
B
321 323Right-handed 310
Helix 27
27
B
341 358Right-handed alpha
Helix 28
28
B
365 380Right-handed alpha
Helix 29
29
B
383 387Right-handed 310
Helix 30
30
B
393 408Right-handed alpha
Helix 31
31
B
423 432Right-handed alpha
Helix 32
32
B
432 441Right-handed alpha
Helix 33
33
D
15 28Right-handed alpha
Helix 34
34
D
44 48Right-handed 310
Helix 35
35
D
113 126Right-handed alpha
Helix 36
36
D
127 130Right-handed 310
Helix 37
37
D
186 194Right-handed alpha
Helix 38
38
D
202 204Right-handed 310
Helix 39
39
D
206 211Right-handed 310
Helix 40
40
D
221 232Right-handed alpha
Helix 41
41
D
296 301Right-handed alpha
Helix 42
42
D
321 323Right-handed 310
Helix 43
43
D
341 358Right-handed alpha
Helix 44
44
D
365 381Right-handed alpha
Helix 45
45
D
383 387Right-handed 310
Helix 46
46
D
393 407Right-handed alpha
Helix 47
47
D
423 432Right-handed alpha
Helix 48
48
D
432 441Right-handed alpha
Helix 49
49
E
15 28Right-handed alpha
Helix 50
50
E
44 48Right-handed 310
Helix 51
51
E
113 126Right-handed alpha
Helix 52
52
E
127 130Right-handed 310
Helix 53
53
E
186 194Right-handed alpha
Helix 54
54
E
202 204Right-handed 310
Helix 55
55
E
206 211Right-handed 310
Helix 56
56
E
221 232Right-handed alpha
Helix 57
57
E
296 301Right-handed alpha
Helix 58
58
E
321 323Right-handed 310
Helix 59
59
E
341 358Right-handed alpha
Helix 60
60
E
365 381Right-handed alpha
Helix 61
61
E
383 387Right-handed 310
Helix 62
62
E
393 407Right-handed alpha
Helix 63
63
E
423 432Right-handed alpha
Helix 64
64
E
432 441Right-handed alpha
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There are 28 sheets in PDB entry 2GVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
33 37parallel
Strand 3
A
8 12parallel
Strand 4
A
168 171parallel
Strand 5
A
331 333parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
76 79anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 144first strand
Strand 2
A
147 154anti-parallel
Strand 3
A
161 166anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
290 291anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
283 286parallel
Strand 3
A
215 218parallel
Strand 4
A
239 242parallel
Strand 5
A
254 257parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
269 272anti-parallel
Strand 3
A
277 279anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
324 325anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
33 37parallel
Strand 3
B
8 12parallel
Strand 4
B
168 171parallel
Strand 5
B
331 333parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
76 79anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 144first strand
Strand 2
B
147 154anti-parallel
Strand 3
B
161 166anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
290 291anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
283 286parallel
Strand 3
B
215 218parallel
Strand 4
B
239 242parallel
Strand 5
B
254 257parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
270 272anti-parallel
Strand 3
B
277 278anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 320first strand
Strand 2
B
324 325anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 133first strand
Strand 2
D
33 37parallel
Strand 3
D
8 12parallel
Strand 4
D
168 171parallel
Strand 5
D
331 333parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 73first strand
Strand 2
D
76 79anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
136 144first strand
Strand 2
D
147 154anti-parallel
Strand 3
D
161 166anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 179first strand
Strand 2
D
290 291anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 200first strand
Strand 2
D
283 286parallel
Strand 3
D
215 218parallel
Strand 4
D
239 242parallel
Strand 5
D
254 257parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 264first strand
Strand 2
D
269 272anti-parallel
Strand 3
D
277 279anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
319 320first strand
Strand 2
D
324 325anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
132 133first strand
Strand 2
E
33 37parallel
Strand 3
E
8 12parallel
Strand 4
E
168 171parallel
Strand 5
E
331 333parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
71 73first strand
Strand 2
E
76 79anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 144first strand
Strand 2
E
147 154anti-parallel
Strand 3
E
161 166anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
178 179first strand
Strand 2
E
290 291anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
198 200first strand
Strand 2
E
283 286parallel
Strand 3
E
215 218parallel
Strand 4
E
239 242parallel
Strand 5
E
254 257parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
260 264first strand
Strand 2
E
269 272anti-parallel
Strand 3
E
277 278anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
319 320first strand
Strand 2
E
324 325anti-parallel
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