Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVH entry

There are 3 chains in PDB entry 2GVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ILE 262
B
 PRO 10ILE 262
C
 ILE 7ILE 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2GVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 35Right-handed alpha
Helix 2
2
A
36 56Right-handed alpha
Helix 3
3
A
155 159Right-handed 310
Helix 4
4
A
166 187Right-handed alpha
Helix 5
5
B
27 35Right-handed alpha
Helix 6
6
B
36 56Right-handed alpha
Helix 7
7
B
127 131Right-handed 310
Helix 8
8
B
155 159Right-handed 310
Helix 9
9
B
166 187Right-handed alpha
Helix 10
10
C
27 35Right-handed alpha
Helix 11
11
C
36 56Right-handed alpha
Helix 12
12
C
125 129Right-handed 310
Helix 13
13
C
155 159Right-handed 310
Helix 14
14
C
166 187Right-handed alpha
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There are 9 sheets in PDB entry 2GVH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
136 137parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
77 88anti-parallel
Strand 3
A
92 103anti-parallel
Strand 4
A
109 121anti-parallel
Strand 5
A
59 64anti-parallel
Strand 6
C
198 199anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
C
189 195anti-parallel
Strand 3
C
240 253anti-parallel
Strand 4
C
223 234anti-parallel
Strand 5
C
208 219anti-parallel
Strand 6
C
148 153anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
208 219anti-parallel
Strand 3
A
223 234anti-parallel
Strand 4
A
240 253anti-parallel
Strand 5
A
189 195anti-parallel
Strand 6
B
67 68anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
B
59 64anti-parallel
Strand 3
B
109 121anti-parallel
Strand 4
B
92 103anti-parallel
Strand 5
B
77 88anti-parallel
Strand 6
B
17 23anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
136 137parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 153first strand
Strand 2
B
208 219anti-parallel
Strand 3
B
223 234anti-parallel
Strand 4
B
240 252anti-parallel
Strand 5
B
190 195anti-parallel
Strand 6
C
67 68anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
C
59 64anti-parallel
Strand 3
C
109 121anti-parallel
Strand 4
C
92 103anti-parallel
Strand 5
C
77 88anti-parallel
Strand 6
C
17 23anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
136 137parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il