Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVK entry

There is 1 chain in PDB entry 2GVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8GLU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2GVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 59Right-handed alpha
Helix 2
2
A
72 79Right-handed alpha
Helix 3
3
A
116 131Right-handed alpha
Helix 4
4
A
167 173Right-handed alpha
Helix 5
5
A
175 182Right-handed 310
Helix 6
6
A
195 201Right-handed alpha
Helix 7
7
A
203 212Right-handed alpha
Helix 8
8
A
230 235Right-handed alpha
Helix 9
9
A
253 256Right-handed 310
Helix 10
10
A
268 281Right-handed alpha
Helix 11
11
A
289 293Right-handed 310
Helix 12
12
A
307 315Right-handed alpha
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There are 3 sheets in PDB entry 2GVK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 144first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
65 71anti-parallel
Strand 5
A
301 305anti-parallel
Strand 6
A
185 194anti-parallel
Strand 7
A
257 266anti-parallel
Strand 8
A
244 252anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 144first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
65 71anti-parallel
Strand 5
A
301 305anti-parallel
Strand 6
A
185 194anti-parallel
Strand 7
A
295 297anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
100 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il