Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVN entry

There are 8 chains in PDB entry 2GVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 3TYR 327
B
ASN 3TYR 327
C
ASN 3TYR 327
D
ASN 3TYR 327
E
ASN 3TYR 327
F
ASN 3TYR 327
G
ASN 3TYR 327
H
ASN 3TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 2GVN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
35 43Right-handed alpha
Helix 3
3
A
44 49Right-handed 310
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
66 82Right-handed alpha
Helix 6
6
A
100 109Right-handed alpha
Helix 7
7
A
130 144Right-handed alpha
Helix 8
8
A
145 148Right-handed 310
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
231 240Right-handed alpha
Helix 11
11
A
256 268Right-handed alpha
Helix 12
12
A
299 311Right-handed alpha
Helix 13
13
A
316 327Right-handed alpha
Helix 14
14
B
35 43Right-handed alpha
Helix 15
15
B
44 49Right-handed 310
Helix 16
16
B
61 65Right-handed 310
Helix 17
17
B
66 82Right-handed alpha
Helix 18
18
B
100 109Right-handed alpha
Helix 19
19
B
130 144Right-handed alpha
Helix 20
20
B
145 148Right-handed 310
Helix 21
21
B
203 207Right-handed 310
Helix 22
22
B
231 240Right-handed alpha
Helix 23
23
B
256 268Right-handed alpha
Helix 24
24
B
299 311Right-handed alpha
Helix 25
25
B
316 327Right-handed alpha
Helix 26
26
C
14 18Right-handed 310
Helix 27
27
C
35 43Right-handed alpha
Helix 28
28
C
44 49Right-handed 310
Helix 29
29
C
61 65Right-handed 310
Helix 30
30
C
66 82Right-handed alpha
Helix 31
31
C
100 109Right-handed alpha
Helix 32
32
C
130 144Right-handed alpha
Helix 33
33
C
145 148Right-handed 310
Helix 34
34
C
203 207Right-handed 310
Helix 35
35
C
231 240Right-handed alpha
Helix 36
36
C
256 269Right-handed alpha
Helix 37
37
C
299 311Right-handed alpha
Helix 38
38
C
316 327Right-handed alpha
Helix 39
39
D
14 16Right-handed 310
Helix 40
40
D
35 43Right-handed alpha
Helix 41
41
D
44 49Right-handed 310
Helix 42
42
D
61 65Right-handed 310
Helix 43
43
D
66 82Right-handed alpha
Helix 44
44
D
100 109Right-handed alpha
Helix 45
45
D
130 144Right-handed alpha
Helix 46
46
D
145 148Right-handed 310
Helix 47
47
D
203 207Right-handed 310
Helix 48
48
D
231 240Right-handed alpha
Helix 49
49
D
256 268Right-handed alpha
Helix 50
50
D
299 311Right-handed alpha
Helix 51
51
D
316 327Right-handed alpha
Helix 52
52
E
35 43Right-handed alpha
Helix 53
53
E
44 49Right-handed 310
Helix 54
54
E
61 65Right-handed 310
Helix 55
55
E
66 82Right-handed alpha
Helix 56
56
E
100 109Right-handed alpha
Helix 57
57
E
130 144Right-handed alpha
Helix 58
58
E
145 148Right-handed 310
Helix 59
59
E
203 207Right-handed 310
Helix 60
60
E
231 240Right-handed alpha
Helix 61
61
E
256 268Right-handed alpha
Helix 62
62
E
299 311Right-handed alpha
Helix 63
63
E
316 327Right-handed alpha
Helix 64
64
F
14 18Right-handed 310
Helix 65
65
F
35 43Right-handed alpha
Helix 66
66
F
44 49Right-handed 310
Helix 67
67
F
61 65Right-handed 310
Helix 68
68
F
66 83Right-handed alpha
Helix 69
69
F
100 109Right-handed alpha
Helix 70
70
F
130 144Right-handed alpha
Helix 71
71
F
145 148Right-handed 310
Helix 72
72
F
203 207Right-handed 310
Helix 73
73
F
231 240Right-handed alpha
Helix 74
74
F
256 268Right-handed alpha
Helix 75
75
F
299 311Right-handed alpha
Helix 76
76
F
316 327Right-handed alpha
Helix 77
77
G
14 18Right-handed 310
Helix 78
78
G
35 43Right-handed alpha
Helix 79
79
G
44 49Right-handed 310
Helix 80
80
G
61 65Right-handed 310
Helix 81
81
G
66 83Right-handed alpha
Helix 82
82
G
100 109Right-handed alpha
Helix 83
83
G
130 144Right-handed alpha
Helix 84
84
G
145 148Right-handed 310
Helix 85
85
G
203 207Right-handed 310
Helix 86
86
G
231 240Right-handed alpha
Helix 87
87
G
256 268Right-handed alpha
Helix 88
88
G
299 311Right-handed alpha
Helix 89
89
G
316 327Right-handed alpha
Helix 90
90
H
14 18Right-handed 310
Helix 91
91
H
35 43Right-handed alpha
Helix 92
92
H
44 49Right-handed 310
Helix 93
93
H
61 65Right-handed 310
Helix 94
94
H
66 82Right-handed alpha
Helix 95
95
H
100 109Right-handed alpha
Helix 96
96
H
130 144Right-handed alpha
Helix 97
97
H
145 148Right-handed 310
Helix 98
98
H
203 207Right-handed 310
Helix 99
99
H
231 240Right-handed alpha
Helix 100
100
H
256 268Right-handed alpha
Helix 101
101
H
299 311Right-handed alpha
Helix 102
102
H
316 327Right-handed alpha
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There are 31 sheets in PDB entry 2GVN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 56first strand
Strand 2
A
6 11parallel
Strand 3
A
88 92parallel
Strand 4
A
115 118parallel
Strand 5
A
153 156parallel
Strand 6
A
159 162anti-parallel
Strand 7
A
186 188anti-parallel
Strand 8
A
193 195anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 168first strand
Strand 2
A
177 178anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
197 199first strand
Strand 2
F
197 199anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
220 224first strand
Strand 2
A
244 249parallel
Strand 3
A
272 277parallel
Strand 4
A
293 294parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
51 60first strand
Strand 2
B
6 13parallel
Strand 3
B
88 92parallel
Strand 4
B
115 118parallel
Strand 5
B
153 156parallel
Strand 6
B
159 162anti-parallel
Strand 7
B
186 188anti-parallel
Strand 8
B
193 195anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 19first strand
Strand 2
B
32 33anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
167 168first strand
Strand 2
B
177 178anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
197 199first strand
Strand 2
E
197 199anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
220 224first strand
Strand 2
B
244 249parallel
Strand 3
B
272 277parallel
Strand 4
B
293 294parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
51 56first strand
Strand 2
C
6 11parallel
Strand 3
C
88 92parallel
Strand 4
C
115 118parallel
Strand 5
C
153 156parallel
Strand 6
C
159 162anti-parallel
Strand 7
C
186 189anti-parallel
Strand 8
C
192 195anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
167 168first strand
Strand 2
C
177 178anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
197 199first strand
Strand 2
H
197 199anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
220 224first strand
Strand 2
C
244 249parallel
Strand 3
C
272 277parallel
Strand 4
C
293 294parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
51 56first strand
Strand 2
D
6 11parallel
Strand 3
D
88 92parallel
Strand 4
D
115 118parallel
Strand 5
D
153 156parallel
Strand 6
D
159 162anti-parallel
Strand 7
D
186 188anti-parallel
Strand 8
D
193 195anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
18 19first strand
Strand 2
D
32 33anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
167 168first strand
Strand 2
D
177 178anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
197 199first strand
Strand 2
G
197 199anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
220 224first strand
Strand 2
D
244 249parallel
Strand 3
D
272 277parallel
Strand 4
D
293 294parallel
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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
51 60first strand
Strand 2
E
6 13parallel
Strand 3
E
88 92parallel
Strand 4
E
115 118parallel
Strand 5
E
153 156parallel
Strand 6
E
159 162anti-parallel
Strand 7
E
186 188anti-parallel
Strand 8
E
193 195anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
18 19first strand
Strand 2
E
32 33anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
167 168first strand
Strand 2
E
177 178anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
220 224first strand
Strand 2
E
244 249parallel
Strand 3
E
272 277parallel
Strand 4
E
293 294parallel
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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
51 56first strand
Strand 2
F
6 11parallel
Strand 3
F
88 92parallel
Strand 4
F
115 118parallel
Strand 5
F
153 156parallel
Strand 6
F
159 162anti-parallel
Strand 7
F
186 189anti-parallel
Strand 8
F
192 195anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
167 168first strand
Strand 2
F
177 178anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
220 224first strand
Strand 2
F
244 249parallel
Strand 3
F
272 277parallel
Strand 4
F
293 294parallel
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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
51 56first strand
Strand 2
G
6 11parallel
Strand 3
G
88 92parallel
Strand 4
G
115 118parallel
Strand 5
G
153 156parallel
Strand 6
G
159 162anti-parallel
Strand 7
G
186 188anti-parallel
Strand 8
G
193 195anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
167 168first strand
Strand 2
G
177 178anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
220 224first strand
Strand 2
G
244 249parallel
Strand 3
G
272 277parallel
Strand 4
G
293 294parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
51 56first strand
Strand 2
H
6 11parallel
Strand 3
H
88 92parallel
Strand 4
H
115 118parallel
Strand 5
H
153 156parallel
Strand 6
H
159 162anti-parallel
Strand 7
H
186 188anti-parallel
Strand 8
H
193 195anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
167 168first strand
Strand 2
H
177 178anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
220 224first strand
Strand 2
H
244 249parallel
Strand 3
H
272 277parallel
Strand 4
H
293 294parallel
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