Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVT entry

There are 5 chains in PDB entry 2GVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38ARG 241
B
 GLU 30LYS 233
C
 GLU 38ARG 241
D
 GLU 30LYS 233
E
 GLU 30LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2GVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 52Right-handed alpha
Helix 2
2
A
96 99Right-handed 310
Helix 3
3
A
116 118Right-handed 310
Helix 4
4
B
32 38Right-handed alpha
Helix 5
5
B
90 93Right-handed 310
Helix 6
6
C
40 52Right-handed alpha
Helix 7
7
C
96 99Right-handed 310
Helix 8
8
C
116 118Right-handed 310
Helix 9
9
D
32 38Right-handed alpha
Helix 10
10
D
41 46Right-handed alpha
Helix 11
11
E
32 38Right-handed alpha
Helix 12
12
E
41 46Right-handed alpha
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There are 19 sheets in PDB entry 2GVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
140 144anti-parallel
Strand 3
A
148 151anti-parallel
Strand 4
A
88 94anti-parallel
Strand 5
A
62 69anti-parallel
Strand 6
A
189 193parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
157 160anti-parallel
Strand 4
A
128 130anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
173 181anti-parallel
Strand 3
A
229 239anti-parallel
Strand 4
A
213 222anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
183 186parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 71first strand
Strand 2
B
76 82anti-parallel
Strand 3
B
148 154anti-parallel
Strand 4
B
122 128anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
142 145anti-parallel
Strand 3
B
135 138anti-parallel
Strand 4
B
104 106anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 173first strand
Strand 2
B
223 232anti-parallel
Strand 3
B
203 207anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 173first strand
Strand 2
B
223 232anti-parallel
Strand 3
B
210 213anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 114first strand
Strand 2
C
140 144anti-parallel
Strand 3
C
148 151anti-parallel
Strand 4
C
82 94anti-parallel
Strand 5
C
154 160anti-parallel
Strand 6
C
128 130anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 114first strand
Strand 2
C
140 144anti-parallel
Strand 3
C
148 151anti-parallel
Strand 4
C
82 94anti-parallel
Strand 5
C
62 77anti-parallel
Strand 6
C
189 193parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 125first strand
Strand 2
C
173 181anti-parallel
Strand 3
C
230 239anti-parallel
Strand 4
C
213 221anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 107first strand
Strand 2
D
135 138anti-parallel
Strand 3
D
142 145anti-parallel
Strand 4
D
76 88anti-parallel
Strand 5
D
148 154anti-parallel
Strand 6
D
122 128anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 107first strand
Strand 2
D
135 138anti-parallel
Strand 3
D
142 145anti-parallel
Strand 4
D
76 88anti-parallel
Strand 5
D
56 71anti-parallel
Strand 6
D
183 186parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 119first strand
Strand 2
D
167 175anti-parallel
Strand 3
D
223 232anti-parallel
Strand 4
D
203 207anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 119first strand
Strand 2
D
167 175anti-parallel
Strand 3
D
223 232anti-parallel
Strand 4
D
210 213anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 107first strand
Strand 2
E
135 138anti-parallel
Strand 3
E
142 145anti-parallel
Strand 4
E
76 88anti-parallel
Strand 5
E
148 154anti-parallel
Strand 6
E
122 128anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 107first strand
Strand 2
E
135 138anti-parallel
Strand 3
E
142 145anti-parallel
Strand 4
E
76 88anti-parallel
Strand 5
E
56 71anti-parallel
Strand 6
E
183 186parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 119first strand
Strand 2
E
167 175anti-parallel
Strand 3
E
223 232anti-parallel
Strand 4
E
203 207anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 119first strand
Strand 2
E
167 175anti-parallel
Strand 3
E
223 232anti-parallel
Strand 4
E
210 213anti-parallel
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