Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVZ entry

There are 3 chains in PDB entry 2GVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 377LEU 565
B
 GLN 880THR 1077
C
 ALA 39LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2GVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
399 405Right-handed alpha
Helix 2
2
A
408 430Right-handed alpha
Helix 3
3
A
454 469Right-handed alpha
Helix 4
4
A
508 519Right-handed alpha
Helix 5
5
A
530 534Right-handed alpha
Helix 6
6
A
551 557Right-handed alpha
Helix 7
7
B
892 899Right-handed alpha
Helix 8
8
B
911 924Right-handed alpha
Helix 9
9
B
967 988Right-handed alpha
Helix 10
10
B
1021 1030Right-handed alpha
Helix 11
11
B
1043 1051Right-handed alpha
Helix 12
12
C
53 65Right-handed alpha
Helix 13
13
C
86 90Right-handed 310
Helix 14
14
C
91 113Right-handed alpha
Helix 15
15
C
121 123Right-handed 310
Helix 16
16
C
124 132Right-handed alpha
Helix 17
17
C
143 156Right-handed alpha
Helix 18
18
C
156 164Right-handed alpha
Helix 19
19
C
174 180Right-handed alpha
Helix 20
20
C
181 187Right-handed alpha
Helix 21
21
C
195 200Right-handed alpha
Helix 22
22
C
230 237Right-handed 310
Helix 23
23
C
251 255Right-handed 310
Helix 24
24
C
264 278Right-handed alpha
Helix 25
25
C
293 304Right-handed alpha
Helix 26
26
C
312 316Right-handed 310
Helix 27
27
C
331 352Right-handed alpha
Helix 28
28
C
368 386Right-handed alpha
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There are 7 sheets in PDB entry 2GVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
383 396anti-parallel
Strand 4
A
486 496anti-parallel
Strand 5
A
505 506anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
383 396anti-parallel
Strand 4
A
486 496anti-parallel
Strand 5
A
527 529parallel
Strand 6
A
561 564anti-parallel
Strand 7
A
542 544anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
934 940first strand
Strand 2
B
943 948anti-parallel
Strand 3
B
886 891anti-parallel
Strand 4
B
997 1001anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1006 1010first strand
Strand 2
B
1016 1020anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1040 1042first strand
Strand 2
B
1068 1075anti-parallel
Strand 3
B
1056 1064anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 214first strand
Strand 2
C
217 224anti-parallel
Strand 3
C
40 47parallel
Strand 4
C
243 249parallel
Strand 5
C
286 287parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 214first strand
Strand 2
C
217 224anti-parallel
Strand 3
C
40 47parallel
Strand 4
C
243 249parallel
Strand 5
C
290 292parallel
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