Analysis of interatomic Contacts of Structural Units in PDB entry:
2GWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GWD entry

There is 1 chain in PDB entry 2GWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 79TYR 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 2GWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 92Right-handed alpha
Helix 2
2
A
96 100Right-handed 310
Helix 3
3
A
120 136Right-handed alpha
Helix 4
4
A
173 196Right-handed alpha
Helix 5
5
A
209 213Right-handed 310
Helix 6
6
A
218 228Right-handed alpha
Helix 7
7
A
229 231Right-handed 310
Helix 8
8
A
234 242Right-handed alpha
Helix 9
9
A
253 276Right-handed alpha
Helix 10
10
A
290 296Right-handed alpha
Helix 11
11
A
300 304Right-handed 310
Helix 12
12
A
307 312Right-handed 310
Helix 13
13
A
316 327Right-handed alpha
Helix 14
14
A
345 351Right-handed alpha
Helix 15
15
A
363 372Right-handed alpha
Helix 16
16
A
393 409Right-handed alpha
Helix 17
17
A
410 421Right-handed alpha
Helix 18
18
A
425 440Right-handed alpha
Helix 19
19
A
450 469Right-handed alpha
Helix 20
20
A
472 475Right-handed 310
Helix 21
21
A
476 486Right-handed alpha
Helix 22
22
A
488 499Right-handed alpha
Helix 23
23
A
507 512Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2GWD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
154 158anti-parallel
Strand 4
A
164 167anti-parallel
Strand 5
A
102 112anti-parallel
Strand 6
A
197 200anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
154 158anti-parallel
Strand 4
A
164 167anti-parallel
Strand 5
A
102 112anti-parallel
Strand 6
A
244 249anti-parallel
Strand 7
A
384 390anti-parallel
Strand 8
A
378 380anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 334first strand
Strand 2
A
337 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
448 449anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il