Analysis of interatomic Contacts of Structural Units in PDB entry:
2GYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GYO entry

There are 2 chains in PDB entry 2GYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 317
B
 MET 1PHE 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2GYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
50 67Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
150 155Right-handed alpha
Helix 9
9
A
183 187Right-handed 310
Helix 10
10
A
208 231Right-handed alpha
Helix 11
11
A
234 238Right-handed 310
Helix 12
12
A
247 258Right-handed alpha
Helix 13
13
A
261 265Right-handed 310
Helix 14
14
A
268 273Right-handed alpha
Helix 15
15
A
275 277Right-handed 310
Helix 16
16
A
278 290Right-handed alpha
Helix 17
17
B
19 26Right-handed alpha
Helix 18
18
B
29 37Right-handed alpha
Helix 19
19
B
50 67Right-handed alpha
Helix 20
20
B
69 73Right-handed 310
Helix 21
21
B
89 98Right-handed alpha
Helix 22
22
B
110 112Right-handed 310
Helix 23
23
B
113 128Right-handed alpha
Helix 24
24
B
150 155Right-handed alpha
Helix 25
25
B
183 187Right-handed 310
Helix 26
26
B
208 231Right-handed alpha
Helix 27
27
B
234 238Right-handed 310
Helix 28
28
B
247 259Right-handed alpha
Helix 29
29
B
261 265Right-handed 310
Helix 30
30
B
268 273Right-handed alpha
Helix 31
31
B
275 277Right-handed 310
Helix 32
32
B
278 290Right-handed alpha
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There are 7 sheets in PDB entry 2GYO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 11first strand
Strand 2
A
160 169anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
75 79parallel
Strand 5
A
105 109parallel
Strand 6
B
105 109anti-parallel
Strand 7
B
75 79parallel
Strand 8
B
133 140parallel
Strand 9
B
160 169anti-parallel
Strand 10
B
2 11anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
B
189 192anti-parallel
Strand 3
B
206 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
309 316anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
240 243parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
189 192anti-parallel
Strand 3
B
85 87anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
41 44anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 181first strand
Strand 2
B
309 316anti-parallel
Strand 3
B
298 305anti-parallel
Strand 4
B
240 243parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il