Analysis of interatomic Contacts of Structural Units in PDB entry:
2GZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GZM entry

There are 4 chains in PDB entry 2GZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLU 267
B
 LYS 2LEU 266
C
 LYS 2GLU 267
D
 LYS 2GLU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2GZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
47 64Right-handed alpha
Helix 3
3
A
74 89Right-handed alpha
Helix 4
4
A
96 108Right-handed alpha
Helix 5
5
A
118 125Right-handed alpha
Helix 6
6
A
125 135Right-handed alpha
Helix 7
7
A
147 154Right-handed alpha
Helix 8
8
A
159 176Right-handed alpha
Helix 9
9
A
187 190Right-handed 310
Helix 10
10
A
191 200Right-handed alpha
Helix 11
11
A
208 223Right-handed alpha
Helix 12
12
A
242 254Right-handed alpha
Helix 13
13
B
16 27Right-handed alpha
Helix 14
14
B
38 41Right-handed 310
Helix 15
15
B
47 64Right-handed alpha
Helix 16
16
B
74 89Right-handed alpha
Helix 17
17
B
96 108Right-handed alpha
Helix 18
18
B
118 125Right-handed alpha
Helix 19
19
B
125 135Right-handed alpha
Helix 20
20
B
147 154Right-handed alpha
Helix 21
21
B
159 175Right-handed alpha
Helix 22
22
B
187 190Right-handed 310
Helix 23
23
B
191 200Right-handed alpha
Helix 24
24
B
208 223Right-handed alpha
Helix 25
25
B
242 250Right-handed alpha
Helix 26
26
C
16 27Right-handed alpha
Helix 27
27
C
38 41Right-handed 310
Helix 28
28
C
47 64Right-handed alpha
Helix 29
29
C
74 89Right-handed alpha
Helix 30
30
C
96 108Right-handed alpha
Helix 31
31
C
118 125Right-handed alpha
Helix 32
32
C
125 135Right-handed alpha
Helix 33
33
C
147 154Right-handed alpha
Helix 34
34
C
159 175Right-handed alpha
Helix 35
35
C
187 190Right-handed 310
Helix 36
36
C
191 200Right-handed alpha
Helix 37
37
C
208 223Right-handed alpha
Helix 38
38
C
242 254Right-handed alpha
Helix 39
39
D
16 27Right-handed alpha
Helix 40
40
D
38 41Right-handed 310
Helix 41
41
D
47 64Right-handed alpha
Helix 42
42
D
74 89Right-handed alpha
Helix 43
43
D
96 108Right-handed alpha
Helix 44
44
D
118 125Right-handed alpha
Helix 45
45
D
125 135Right-handed alpha
Helix 46
46
D
147 154Right-handed alpha
Helix 47
47
D
159 171Right-handed alpha
Helix 48
48
D
172 174Right-handed 310
Helix 49
49
D
187 190Right-handed 310
Helix 50
50
D
191 200Right-handed alpha
Helix 51
51
D
208 223Right-handed alpha
Helix 52
52
D
242 250Right-handed alpha
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There are 8 sheets in PDB entry 2GZM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
69 72parallel
Strand 3
A
7 11parallel
Strand 4
A
32 36parallel
Strand 5
A
236 239parallel
Strand 6
A
260 262parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
112 117parallel
Strand 3
A
180 183parallel
Strand 4
A
204 207parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
69 72parallel
Strand 3
B
7 11parallel
Strand 4
B
32 36parallel
Strand 5
B
236 239parallel
Strand 6
B
260 262parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 144first strand
Strand 2
B
112 117parallel
Strand 3
B
180 183parallel
Strand 4
B
204 207parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
69 72parallel
Strand 3
C
7 11parallel
Strand 4
C
32 36parallel
Strand 5
C
236 239parallel
Strand 6
C
260 262parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 144first strand
Strand 2
C
112 117parallel
Strand 3
C
180 183parallel
Strand 4
C
204 207parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 95first strand
Strand 2
D
67 72parallel
Strand 3
D
6 11parallel
Strand 4
D
32 36parallel
Strand 5
D
236 239parallel
Strand 6
D
260 262parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 144first strand
Strand 2
D
112 117parallel
Strand 3
D
180 183parallel
Strand 4
D
204 207parallel
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