Analysis of interatomic Contacts of Structural Units in PDB entry:
2H47

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2H47 entry

There are 13 chains in PDB entry 2H47 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	VAL 387
B	HIS 12	SER 61
B	ILE 63	ASN 135
C	ALA 2	SER 129
D	PRO 29	GLY 389
E	ASP 11	SER 61
E	ILE 63	ASN 135
F	PRO 29	VAL 390
G	GLY 9	SER 61
G	ILE 63	LYS 134
H	LYS 28	GLY 389
I	ASP 11	SER 61
I	ILE 63	LYS 134

There are 44 helices in PDB entry 2H47. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	42	44	Right-handed 310
Helix 2	2	A	53	59	Right-handed 310
Helix 3	3	A	138	140	Right-handed 310
Helix 4	4	A	177	180	Right-handed 310
Helix 5	5	A	272	278	Right-handed alpha
Helix 6	6	B	12	20	Right-handed 310
Helix 7	7	B	21	26	Right-handed alpha
Helix 8	8	B	30	34	Right-handed 310
Helix 9	9	B	41	44	Right-handed 310
Helix 10	10	B	101	108	Right-handed 310
Helix 11	11	C	40	45	Right-handed alpha
Helix 12	12	C	55	65	Right-handed alpha
Helix 13	13	C	67	71	Right-handed 310
Helix 14	14	C	100	102	Right-handed 310
Helix 15	15	D	42	44	Right-handed 310
Helix 16	16	D	53	59	Right-handed 310
Helix 17	17	D	138	140	Right-handed 310
Helix 18	18	D	177	180	Right-handed 310
Helix 19	19	D	272	278	Right-handed alpha
Helix 20	20	E	16	20	Right-handed 310
Helix 21	21	E	21	26	Right-handed alpha
Helix 22	22	E	30	34	Right-handed 310
Helix 23	23	E	41	44	Right-handed 310
Helix 24	24	E	101	108	Right-handed 310
Helix 25	25	F	42	44	Right-handed 310
Helix 26	26	F	53	59	Right-handed 310
Helix 27	27	F	138	140	Right-handed 310
Helix 28	28	F	177	180	Right-handed 310
Helix 29	29	F	272	279	Right-handed alpha
Helix 30	30	G	12	20	Right-handed 310
Helix 31	31	G	21	26	Right-handed alpha
Helix 32	32	G	30	34	Right-handed 310
Helix 33	33	G	41	44	Right-handed 310
Helix 34	34	G	101	108	Right-handed 310
Helix 35	35	H	42	44	Right-handed 310
Helix 36	36	H	53	59	Right-handed 310
Helix 37	37	H	138	140	Right-handed 310
Helix 38	38	H	177	180	Right-handed 310
Helix 39	39	H	272	279	Right-handed alpha
Helix 40	40	I	16	20	Right-handed 310
Helix 41	41	I	21	26	Right-handed alpha
Helix 42	42	I	30	34	Right-handed 310
Helix 43	43	I	41	44	Right-handed 310
Helix 44	44	I	101	108	Right-handed 310

There are 46 sheets in PDB entry 2H47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	77	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	46	51	anti-parallel
Strand 4	A	381	384	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	86	first strand
Strand 2	A	92	100	anti-parallel
Strand 3	A	108	116	anti-parallel
Strand 4	A	122	128	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	150	156	anti-parallel
Strand 3	A	160	166	anti-parallel
Strand 4	A	171	176	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	194	199	anti-parallel
Strand 3	A	204	209	anti-parallel
Strand 4	A	215	220	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	263	265	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	296	302	anti-parallel
Strand 3	A	288	290	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	296	302	anti-parallel
Strand 3	A	316	321	anti-parallel
Strand 4	A	326	332	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	342	first strand
Strand 2	A	347	351	anti-parallel
Strand 3	A	356	360	anti-parallel
Strand 4	A	367	372	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	92	94	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	81	83	anti-parallel
Strand 3	B	122	125	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	128	132	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	28	35	parallel
Strand 3	C	92	98	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	22	first strand
Strand 2	C	122	127	parallel
Strand 3	C	108	111	anti-parallel
Strand 4	C	49	52	anti-parallel
Strand 5	C	80	83	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	77	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	379	384	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	86	first strand
Strand 2	D	92	100	anti-parallel
Strand 3	D	108	116	anti-parallel
Strand 4	D	121	128	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	171	176	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	187	first strand
Strand 2	D	194	199	anti-parallel
Strand 3	D	204	209	anti-parallel
Strand 4	D	215	220	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	252	256	anti-parallel
Strand 4	D	263	265	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	296	302	anti-parallel
Strand 3	D	288	290	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	296	302	anti-parallel
Strand 3	D	316	321	anti-parallel
Strand 4	D	326	332	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	342	first strand
Strand 2	D	347	351	anti-parallel
Strand 3	D	356	360	anti-parallel
Strand 4	D	367	372	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	92	94	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	67	first strand
Strand 2	E	74	83	anti-parallel
Strand 3	E	122	125	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	67	first strand
Strand 2	E	74	83	anti-parallel
Strand 3	E	128	132	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	77	first strand
Strand 2	F	61	66	anti-parallel
Strand 3	F	46	51	anti-parallel
Strand 4	F	379	384	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	86	first strand
Strand 2	F	92	100	anti-parallel
Strand 3	F	108	116	anti-parallel
Strand 4	F	121	128	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	144	first strand
Strand 2	F	150	155	anti-parallel
Strand 3	F	161	166	anti-parallel
Strand 4	F	171	176	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	187	first strand
Strand 2	F	194	199	anti-parallel
Strand 3	F	204	209	anti-parallel
Strand 4	F	215	220	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	238	first strand
Strand 2	F	242	246	anti-parallel
Strand 3	F	251	256	anti-parallel
Strand 4	F	263	269	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	296	302	anti-parallel
Strand 3	F	288	290	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	296	302	anti-parallel
Strand 3	F	316	321	anti-parallel
Strand 4	F	326	332	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	342	first strand
Strand 2	F	347	351	anti-parallel
Strand 3	F	356	360	anti-parallel
Strand 4	F	367	372	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	39	first strand
Strand 2	G	92	94	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	57	first strand
Strand 2	G	81	83	anti-parallel
Strand 3	G	122	125	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	67	first strand
Strand 2	G	74	79	anti-parallel
Strand 3	G	128	132	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	77	first strand
Strand 2	H	61	66	anti-parallel
Strand 3	H	46	51	anti-parallel
Strand 4	H	379	384	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	86	first strand
Strand 2	H	92	100	anti-parallel
Strand 3	H	108	116	anti-parallel
Strand 4	H	122	127	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	144	first strand
Strand 2	H	150	156	anti-parallel
Strand 3	H	160	166	anti-parallel
Strand 4	H	171	176	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	182	187	first strand
Strand 2	H	194	199	anti-parallel
Strand 3	H	204	209	anti-parallel
Strand 4	H	215	220	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	237	238	first strand
Strand 2	H	242	246	anti-parallel
Strand 3	H	252	256	anti-parallel
Strand 4	H	263	265	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	281	282	first strand
Strand 2	H	296	302	anti-parallel
Strand 3	H	288	291	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	281	282	first strand
Strand 2	H	296	302	anti-parallel
Strand 3	H	314	321	anti-parallel
Strand 4	H	326	336	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	338	342	first strand
Strand 2	H	347	351	anti-parallel
Strand 3	H	356	360	anti-parallel
Strand 4	H	367	372	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	39	first strand
Strand 2	I	92	94	anti-parallel

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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	81	83	anti-parallel
Strand 3	I	122	125	anti-parallel

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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	62	68	first strand
Strand 2	I	73	79	anti-parallel
Strand 3	I	128	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2H47

Analysis of interatomic Contacts of Structural Units in PDB entry:
2H47