Analysis of interatomic Contacts of Structural Units in PDB entry:
2H6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2H6J entry

There are 14 chains in PDB entry 2H6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	GLU 235
B	ALA 9	GLU 235
C	ALA 9	GLU 235
D	ALA 9	GLU 235
E	ALA 9	GLU 235
F	ALA 9	GLU 235
G	ALA 9	GLU 235
H	ASN -44	ALA 219
I	ASN -44	ALA 219
J	ASN -44	ALA 219
K	ASN -44	ALA 219
L	ASN -44	ALA 219
M	ASN -44	ALA 219
N	ASN -44	ALA 219

There are101 helices in PDB entry 2H6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	26	Right-handed alpha
Helix 2	2	A	67	89	Right-handed alpha
Helix 3	3	A	90	94	Right-handed 310
Helix 4	4	A	95	114	Right-handed alpha
Helix 5	5	A	159	169	Right-handed alpha
Helix 6	6	A	176	190	Right-handed alpha
Helix 7	7	A	228	232	Right-handed 310
Helix 8	8	B	11	26	Right-handed alpha
Helix 9	9	B	67	89	Right-handed alpha
Helix 10	10	B	90	94	Right-handed 310
Helix 11	11	B	95	114	Right-handed alpha
Helix 12	12	B	159	169	Right-handed alpha
Helix 13	13	B	176	190	Right-handed alpha
Helix 14	14	B	228	232	Right-handed 310
Helix 15	15	C	11	26	Right-handed alpha
Helix 16	16	C	67	89	Right-handed alpha
Helix 17	17	C	90	94	Right-handed 310
Helix 18	18	C	95	114	Right-handed alpha
Helix 19	19	C	159	169	Right-handed alpha
Helix 20	20	C	176	190	Right-handed alpha
Helix 21	21	C	228	232	Right-handed 310
Helix 22	22	D	11	26	Right-handed alpha
Helix 23	23	D	67	89	Right-handed alpha
Helix 24	24	D	90	94	Right-handed 310
Helix 25	25	D	95	114	Right-handed alpha
Helix 26	26	D	159	169	Right-handed alpha
Helix 27	27	D	176	190	Right-handed alpha
Helix 28	28	D	228	232	Right-handed 310
Helix 29	29	E	11	26	Right-handed alpha
Helix 30	30	E	67	89	Right-handed alpha
Helix 31	31	E	90	94	Right-handed 310
Helix 32	32	E	95	114	Right-handed alpha
Helix 33	33	E	159	169	Right-handed alpha
Helix 34	34	E	176	190	Right-handed alpha
Helix 35	35	E	228	232	Right-handed 310
Helix 36	36	F	11	26	Right-handed alpha
Helix 37	37	F	67	89	Right-handed alpha
Helix 38	38	F	90	94	Right-handed 310
Helix 39	39	F	95	114	Right-handed alpha
Helix 40	40	F	159	169	Right-handed alpha
Helix 41	41	F	176	190	Right-handed alpha
Helix 42	42	F	228	232	Right-handed 310
Helix 43	43	G	11	26	Right-handed alpha
Helix 44	44	G	67	89	Right-handed alpha
Helix 45	45	G	90	94	Right-handed 310
Helix 46	46	G	95	114	Right-handed alpha
Helix 47	47	G	159	169	Right-handed alpha
Helix 48	48	G	176	190	Right-handed alpha
Helix 49	49	G	228	232	Right-handed 310
Helix 50	50	H	-41	-32	Right-handed alpha
Helix 51	51	H	-31	-28	Right-handed 310
Helix 52	52	H	48	71	Right-handed alpha
Helix 53	53	H	75	89	Right-handed alpha
Helix 54	54	H	90	95	Right-handed alpha
Helix 55	55	H	142	154	Right-handed alpha
Helix 56	56	H	161	177	Right-handed alpha
Helix 57	57	H	207	218	Right-handed alpha
Helix 58	58	I	-41	-32	Right-handed alpha
Helix 59	59	I	-31	-28	Right-handed 310
Helix 60	60	I	48	71	Right-handed alpha
Helix 61	61	I	75	95	Right-handed alpha
Helix 62	62	I	142	154	Right-handed alpha
Helix 63	63	I	162	177	Right-handed alpha
Helix 64	64	I	207	218	Right-handed alpha
Helix 65	65	J	-41	-32	Right-handed alpha
Helix 66	66	J	-31	-28	Right-handed 310
Helix 67	67	J	48	71	Right-handed alpha
Helix 68	68	J	75	95	Right-handed alpha
Helix 69	69	J	142	154	Right-handed alpha
Helix 70	70	J	161	177	Right-handed alpha
Helix 71	71	J	206	218	Right-handed alpha
Helix 72	72	K	-41	-32	Right-handed alpha
Helix 73	73	K	48	71	Right-handed alpha
Helix 74	74	K	75	89	Right-handed alpha
Helix 75	75	K	90	95	Right-handed alpha
Helix 76	76	K	142	154	Right-handed alpha
Helix 77	77	K	162	177	Right-handed alpha
Helix 78	78	K	206	218	Right-handed alpha
Helix 79	79	L	-41	-32	Right-handed alpha
Helix 80	80	L	48	71	Right-handed alpha
Helix 81	81	L	75	89	Right-handed alpha
Helix 82	82	L	90	95	Right-handed alpha
Helix 83	83	L	142	154	Right-handed alpha
Helix 84	84	L	162	177	Right-handed alpha
Helix 85	85	L	206	218	Right-handed alpha
Helix 86	86	M	-41	-32	Right-handed alpha
Helix 87	87	M	-31	-28	Right-handed 310
Helix 88	88	M	48	71	Right-handed alpha
Helix 89	89	M	75	89	Right-handed alpha
Helix 90	90	M	90	95	Right-handed alpha
Helix 91	91	M	142	154	Right-handed alpha
Helix 92	92	M	161	177	Right-handed alpha
Helix 93	93	M	206	218	Right-handed alpha
Helix 94	94	N	-41	-32	Right-handed alpha
Helix 95	95	N	-31	-28	Right-handed 310
Helix 96	96	N	48	71	Right-handed alpha
Helix 97	97	N	75	89	Right-handed alpha
Helix 98	98	N	90	95	Right-handed alpha
Helix 99	99	N	142	154	Right-handed alpha
Helix 100	100	N	161	177	Right-handed alpha
Helix 101	101	N	206	218	Right-handed alpha

There are 35 sheets in PDB entry 2H6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	30	34	anti-parallel
Strand 3	A	38	43	anti-parallel
Strand 4	A	207	212	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	146	150	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	38	43	anti-parallel
Strand 4	B	207	212	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	137	142	anti-parallel
Strand 5	B	146	150	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	30	34	anti-parallel
Strand 3	C	38	43	anti-parallel
Strand 4	C	207	212	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	60	66	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	137	142	anti-parallel
Strand 5	C	147	150	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	157	first strand
Strand 2	D	29	34	anti-parallel
Strand 3	D	38	43	anti-parallel
Strand 4	D	207	212	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	60	66	anti-parallel
Strand 3	D	120	126	anti-parallel
Strand 4	D	137	142	anti-parallel
Strand 5	D	147	150	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	156	first strand
Strand 2	E	30	34	anti-parallel
Strand 3	E	38	43	anti-parallel
Strand 4	E	207	212	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	60	66	anti-parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	137	142	anti-parallel
Strand 5	E	146	150	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	156	first strand
Strand 2	F	30	34	anti-parallel
Strand 3	F	38	43	anti-parallel
Strand 4	F	207	212	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	60	66	anti-parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	137	142	anti-parallel
Strand 5	F	146	150	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	156	first strand
Strand 2	G	30	34	anti-parallel
Strand 3	G	38	43	anti-parallel
Strand 4	G	207	212	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	60	66	anti-parallel
Strand 3	G	120	126	anti-parallel
Strand 4	G	137	142	anti-parallel
Strand 5	G	147	150	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	139	first strand
Strand 2	H	3	7	anti-parallel
Strand 3	H	12	16	anti-parallel
Strand 4	H	193	198	anti-parallel
Strand 5	H	201	204	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	25	28	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	41	47	anti-parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	118	123	anti-parallel
Strand 5	H	129	131	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	139	first strand
Strand 2	I	3	7	anti-parallel
Strand 3	I	12	16	anti-parallel
Strand 4	I	193	198	anti-parallel
Strand 5	I	201	203	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	22	first strand
Strand 2	I	25	28	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	100	107	anti-parallel
Strand 4	I	118	123	anti-parallel
Strand 5	I	129	131	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	139	first strand
Strand 2	J	3	7	anti-parallel
Strand 3	J	12	16	anti-parallel
Strand 4	J	193	198	anti-parallel
Strand 5	J	201	203	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	21	first strand
Strand 2	J	26	28	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	41	47	anti-parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	118	123	anti-parallel
Strand 5	J	129	131	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	136	139	first strand
Strand 2	K	3	7	anti-parallel
Strand 3	K	12	16	anti-parallel
Strand 4	K	193	198	anti-parallel
Strand 5	K	201	203	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	22	first strand
Strand 2	K	25	28	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	38	first strand
Strand 2	K	41	47	anti-parallel
Strand 3	K	100	107	anti-parallel
Strand 4	K	118	123	anti-parallel
Strand 5	K	129	131	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	139	first strand
Strand 2	L	3	7	anti-parallel
Strand 3	L	12	16	anti-parallel
Strand 4	L	193	198	anti-parallel
Strand 5	L	201	203	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	26	28	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	38	first strand
Strand 2	L	41	47	anti-parallel
Strand 3	L	100	107	anti-parallel
Strand 4	L	118	123	anti-parallel
Strand 5	L	129	131	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	136	139	first strand
Strand 2	M	3	7	anti-parallel
Strand 3	M	12	16	anti-parallel
Strand 4	M	193	198	anti-parallel
Strand 5	M	201	203	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	22	first strand
Strand 2	M	25	28	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	38	first strand
Strand 2	M	41	47	anti-parallel
Strand 3	M	100	107	anti-parallel
Strand 4	M	118	123	anti-parallel
Strand 5	M	129	131	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	136	139	first strand
Strand 2	N	3	7	anti-parallel
Strand 3	N	12	16	anti-parallel
Strand 4	N	193	198	anti-parallel
Strand 5	N	201	204	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	22	first strand
Strand 2	N	25	28	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	34	38	first strand
Strand 2	N	41	47	anti-parallel
Strand 3	N	100	107	anti-parallel
Strand 4	N	118	123	anti-parallel
Strand 5	N	129	131	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2H6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
2H6J