Analysis of interatomic Contacts of Structural Units in PDB entry:
2H84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2H84 entry

There are 2 chains in PDB entry 2H84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2785VAL 3147
B
 ASN 2785VAL 3147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 2H84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2803 2814Right-handed alpha
Helix 2
2
A
2817 2830Right-handed alpha
Helix 3
3
A
2844 2855Right-handed 310
Helix 4
4
A
2856 2884Right-handed alpha
Helix 5
5
A
2886 2890Right-handed 310
Helix 6
6
A
2905 2915Right-handed alpha
Helix 7
7
A
2928 2930Right-handed 310
Helix 8
8
A
2931 2945Right-handed alpha
Helix 9
9
A
2960 2964Right-handed 310
Helix 10
10
A
2969 2979Right-handed alpha
Helix 11
11
A
3033 3054Right-handed alpha
Helix 12
12
A
3074 3085Right-handed alpha
Helix 13
13
A
3088 3091Right-handed 310
Helix 14
14
A
3092 3103Right-handed alpha
Helix 15
15
A
3107 3119Right-handed alpha
Helix 16
16
B
2803 2814Right-handed alpha
Helix 17
17
B
2817 2830Right-handed alpha
Helix 18
18
B
2844 2855Right-handed 310
Helix 19
19
B
2856 2884Right-handed alpha
Helix 20
20
B
2905 2915Right-handed alpha
Helix 21
21
B
2928 2930Right-handed 310
Helix 22
22
B
2931 2945Right-handed alpha
Helix 23
23
B
2960 2964Right-handed 310
Helix 24
24
B
2969 2979Right-handed alpha
Helix 25
25
B
3033 3054Right-handed alpha
Helix 26
26
B
3062 3066Right-handed 310
Helix 27
27
B
3074 3085Right-handed alpha
Helix 28
28
B
3088 3091Right-handed 310
Helix 29
29
B
3092 3103Right-handed alpha
Helix 30
30
B
3107 3119Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2H84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2921 2926first strand
Strand 2
A
2892 2897parallel
Strand 3
A
2951 2958parallel
Strand 4
A
2982 2989anti-parallel
Strand 5
A
2788 2795anti-parallel
Strand 6
A
3000 3009anti-parallel
Strand 7
A
3137 3145anti-parallel
Strand 8
A
3126 3133anti-parallel
Strand 9
A
3067 3070parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2801 2802first strand
Strand 2
A
2835 2836anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3017 3022first strand
Strand 2
A
3025 3030anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2921 2926first strand
Strand 2
B
2892 2897parallel
Strand 3
B
2951 2958parallel
Strand 4
B
2982 2990anti-parallel
Strand 5
B
2787 2795anti-parallel
Strand 6
B
3000 3009anti-parallel
Strand 7
B
3137 3145anti-parallel
Strand 8
B
3126 3133anti-parallel
Strand 9
B
3067 3070parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2801 2802first strand
Strand 2
B
2835 2836anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3017 3022first strand
Strand 2
B
3025 3030anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il